PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023319-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 385aa    MW: 43549.8 Da    PI: 6.7961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023319-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52121391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Ptd+elvv+yL++k++++ + +  +i+evd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk+++
  PSME_00023319-RA  12 LPPGFRFFPTDDELVVHYLCRKAASQAIAV-PIIAEVDLYKFDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIT 103
                       79*************************999.88***************8888899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
  PSME_00023319-RA 104 AKgSNKRVGIKKALVFYVGKAPKGNKTNWIMHEYRL 139
                       *966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-638165IPR003441NAC domain
PROSITE profilePS5100560.79112165IPR003441NAC domain
PfamPF023651.3E-2613139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGRQNAEAQL NLPPGFRFFP TDDELVVHYL CRKAASQAIA VPIIAEVDLY KFDPWQLPEK  60
ALFGEKEWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PITAKGSNKR VGIKKALVFY  120
VGKAPKGNKT NWIMHEYRLA DVNRSAKKKG SLRLDDWVLC RIYNKKSSAE KLAKDQEWSS  180
EEAMEQFHEE IDEKVPGILH TGNTVMNSSI EHSERISQDS TRSAPSPNCR TVSNHDSRAS  240
AITSLRYNSN PIFEQNLNIS NASSAPMELP ELVPIFSSMN NHRTNYDSAD LIPPILLTDS  300
SCSMQSSHDH KSEKEEVQSS FKLEELMQQQ QENAGLNQSM FTFGFDSLQN PFPQLDQIQP  360
PLINDPFQDY LASLTAPGYL QRSSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-8841717174Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00121DAPTransfer from AT1G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0867730.0EF086773.1 Picea sitchensis clone WS02922_C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020254522.11e-102LOW QUALITY PROTEIN: NAC domain-containing protein 68-like
TrEMBLA9NZG80.0A9NZG8_PICSI; Uncharacterized protein
STRINGGSMUA_Achr4P02390_0011e-100(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-96NAC family protein