PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00023293-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | C3H | ||||||||
Protein Properties | Length: 240aa MW: 26628.1 Da PI: 9.2423 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.7 | 5.4e-10 | 82 | 105 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C++++rtG+C yG +C+++H+p PSME_00023293-RA 82 IDCSHYMRTGFCGYGMNCRYNHPP 105 58********************97 PP | |||||||
2 | zf-CCCH | 35.9 | 1.3e-11 | 129 | 154 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ rtG+CkyG++Ck+ H++ PSME_00023293-RA 129 GEKECTYYIRTGFCKYGASCKYDHPQ 154 6789********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.854 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-5 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-7 | 82 | 105 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 83 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 84 | 104 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-4 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 130 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 133 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MIDGIYRATV PQQRPASGVL RGRRVSDGRA DNWLPYYAGP NSAKSAAESI KESTWRMPLQ 60 LQDPRSRMNG YSESYPERPG QIDCSHYMRT GFCGYGMNCR YNHPPNMKQQ AARNKGELPE 120 RVGHNACQGE KECTYYIRTG FCKYGASCKY DHPQPAALGP LVPVSGSPLY ATVRPPIAPA 180 SATQYSPGLP TWPSHRTPYR QSPHMPGALS YMPVMYSPHQ GMLTASVSTP DLPRTDLNDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677077 | 1e-124 | EF677077.1 Picea sitchensis clone WS02761_F21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMQ0 | 1e-129 | B8LMQ0_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 6e-27 | C3H family protein |