PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023078-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 355aa    MW: 38404.3 Da    PI: 9.316
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023078-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.81.7e-21214276163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+++v++L+aeN++L+ el++ ++  +kl +e+
  PSME_00023078-RA 214 ERELKRQRRKQSNRESARRSRLRKQAECEELAKRVEVLKAENTSLRTELNQVEEAHKKLSTEN 276
                       89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165961.5E-687175No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-15211273No hitNo description
PfamPF001709.9E-20214276IPR004827Basic-leucine zipper domain
SMARTSM003382.2E-19214278IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.553216279IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.98E-11217272No hitNo description
CDDcd147022.73E-20219269No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGSSSCLPLP SLLVYVDSNS YQQTSDNSPL DTGSNREILG TSGSPKTTQG KHKFGLDITQ  60
KSGQPQTDFG QPRIDLGQSA PTSGRYSRGS QATQKKVFEL NSAKAADAQN ANTTSYNAHG  120
GSAFGASGAQ AANSTVNLAI AAVPISIAGK SSTVAGSKTN LNIGMDYWSG STTATSTMRG  180
KRPAVPRTTA MVPAPQSISL MVPCDGVPAE LWDERELKRQ RRKQSNRESA RRSRLRKQAE  240
CEELAKRVEV LKAENTSLRT ELNQVEEAHK KLSTENSFLY KKLRKNPEEE TRDTKSEKDG  300
DAGTGEQLEQ QNEDTESGAV ESMQRDGRRE ETSFNLDGRN RPLDNRNQAV SVSAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230236RRSRLRK
2230237RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1108293e-77BT110829.1 Picea glauca clone GQ03228_I04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-37basic region/leucine zipper transcription factor 68