PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00023072-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 21997.6 Da PI: 10.3123 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.8 | 3.7e-48 | 36 | 162 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kk++++ + + +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky++g+r++r++ s Wk+tg dk++++ PSME_00023072-RA 36 PPGFRFFPTDEELVVHYLCKKAASQIILV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRPKRVAGSRHWKSTGADKPIHA 127 9***********************99888.78***************8777899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+ k Lvfy g+apkg++t+W+mhey+l PSME_00023072-RA 128 KgGKKRVGINKALVFYAGKAPKGSNTNWIMHEYHL 162 966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-53 | 29 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.042 | 35 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-24 | 36 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGGIKGLGTI RVAIHLEELC KQARDHCALL VHNQWPPGFR FFPTDEELVV HYLCKKAASQ 60 IILVPIIAEV DLYKYDPWQL PDKALFGEKE WYFFTPRDRK YPNGSRPKRV AGSRHWKSTG 120 ADKPIHAKGG KKRVGINKAL VFYAGKAPKG SNTNWIMHEY HLPDVSRPAR KKGSLRVSWS 180 ISSLLCFESA VLTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-67 | 30 | 178 | 12 | 155 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-67 | 30 | 178 | 12 | 155 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-67 | 30 | 178 | 12 | 155 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-67 | 30 | 178 | 12 | 155 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swm_B | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swm_C | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swm_D | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_A | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_B | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_C | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_D | 2e-67 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
4dul_A | 2e-67 | 30 | 178 | 12 | 155 | NAC domain-containing protein 19 |
4dul_B | 2e-67 | 30 | 178 | 12 | 155 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016682926.1 | 8e-75 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 4e-72 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0D6R3P9 | 1e-84 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_010268987.1 | 4e-74 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-74 | NAC family protein |