PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023048-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 350aa    MW: 39898.8 Da    PI: 6.4614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023048-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13115158855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        Er RR+++++ f++L +llP++      K +K++i+e+A++YIk Lq
  PSME_00023048-RA 115 TERERRKKMRNMFSNLHSLLPNL----PAKADKSTIVEEAIRYIKTLQ 158
                       6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.234107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-12112162No hitNo description
SMARTSM003533.2E-9115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-11115158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMAQFRMKYC NCSDNHLREQ DHERSKLQSI NIAQDIDFLS NDLQDQYHME YCDRQESVTE  60
PDLDHDQDSH GCKPREPKSV DYKQSSQSLN LGELGLDNSL MKSIEPEDQG IHIWTERERR  120
KKMRNMFSNL HSLLPNLPAK ADKSTIVEEA IRYIKTLQQS LHVLENQRLD KARAATTLEF  180
ELSSTFHEMQ HHHHVSAAAM RSASEAPVFY NPLIAECSAS SGFEPRTSRQ YSRTISTCSP  240
PIDHCFFQTW SSPNVVLSVR GDDAHMMICS SPPKQGLLTT IFSTLEKHKV DVVTAHISSD  300
SCRSMYMIHA QAHAVVNNRD QFLESKAREE AFRSAAGELV IYLSSLPGQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0834860.0EF083486.1 Picea sitchensis clone WS02718_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQC20.0A9NQC2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-41bHLH family protein