PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00022667-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 21442.7 Da PI: 10.1982 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.8 | 3.9e-48 | 28 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdee+vv+yL+kk++++ +++ +i+evd+yk++ w++p k+ +ekewyfF++rd+ky++g+r++ra+ s yWkatg dk++ + PSME_00022667-RA 28 PPGFRFFPTDEEMVVHYLCKKAASQIIPV-PIIAEVDLYKYDQWQIPDKALFGEKEWYFFTPRDRKYPNGSRPKRAAGSRYWKATGADKPINA 119 9****************************.88***************8777899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl PSME_00022667-RA 120 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 154 966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-52 | 20 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.312 | 27 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-25 | 28 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGTSLGDFHE EQPWILKNMD YHEHNQWPPG FRFFPTDEEM VVHYLCKKAA SQIIPVPIIA 60 EVDLYKYDQW QIPDKALFGE KEWYFFTPRD RKYPNGSRPK RAAGSRYWKA TGADKPINAK 120 GGKKRVGIKK ALVFYAGKAP KGSKTNWIMH EYRLADVSRP ARKKGSLRVS WSISSLLCFE 180 SAVLTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-68 | 28 | 169 | 18 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-68 | 28 | 169 | 18 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-68 | 28 | 169 | 18 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-68 | 28 | 169 | 18 | 154 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-68 | 28 | 169 | 18 | 154 | NAC domain-containing protein 19 |
4dul_B | 2e-68 | 28 | 169 | 18 | 154 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792530.1 | 2e-78 | NAC domain-containing protein 2-like isoform X1 | ||||
Swissprot | Q39013 | 4e-75 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
Swissprot | Q52QH4 | 6e-75 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D6R3P9 | 2e-89 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_008792530.1 | 9e-78 | (Phoenix dactylifera) | ||||
STRING | GSMUA_Achr4P02390_001 | 9e-78 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-77 | NAC family protein |