PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022558-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 546aa    MW: 60386.1 Da    PI: 6.5878
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022558-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.4e-32310365156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH+rFv a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  PSME_00022558-RA 310 KARRCWSPELHRRFVTALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 365
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-29307368IPR009057Homeodomain-like
PROSITE profilePS5129413.752307367IPR017930Myb domain
SuperFamilySSF466891.61E-17308368IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-26310365IPR006447Myb domain, plants
PfamPF002495.6E-7312363IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MTMASPPELT LECRLSATSY SNVLKAINLV SDQFERMRRL DEYLKGLEEE RKKIEAFKRE  60
LPYCMHLLND AIAASKEQLA HCQPSVQAPR PMQQASFQFE EEQYNGPVLE EFIPIKKICD  120
ESGDESPENN QNDAKRTKFA NGDKPNWMIS AQLWSQNSET QECKKEKTSS LEEPPKQHDS  180
QLRSDQEQLF PTNSNLFSDS KQRTGGAFLP FTRERQSNPA VSARSNTVKP LPDLALSSAE  240
QEVGSTFRCN ETATMNNVTA TSMSRPKEPT ETIVPAPQKE VVAKPNGSVC TVPTPAASNA  300
TQSGGQSQRK ARRCWSPELH RRFVTALQQL GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ  360
KYRLHTRRPS PSPPAPTSQP PQLVVLGGIW VPPEYAAHAA VAAHQTPGLY STLSNTTSSH  420
SQSHYCQSPM AQEHYSQMNM SSQLQLPQPA YCEQQQTPSQ SLSSPQGPLQ LTGQSSGARG  480
TSVDGGREES VGEDGKSENS SWKGEEIARN VEARNMGRGL SLRKQPLQSV DGDEEDSRGS  540
ETTLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14310363154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14310363154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14310363154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14310363154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14310363255Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5811971e-179KF581197.1 Taxus wallichiana var. chinensis GARP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A171NYB90.0A0A171NYB9_TAXWC; GARP2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-71G2-like family protein