PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00022409-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 19010.6 Da PI: 6.5033 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.3 | 1.9e-41 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++r+kC+++Cvlapy+p+++p+kf +h+lFG+ +v+kll++lp e+r da+sslvyeA+ar+ dPv+G++gvi++lq++le+++++ PSME_00022409-RA 10 ACAACKFHRKKCSEKCVLAPYLPHNDPNKFLLLHRLFGTGHVVKLLQELPAEQRGDAVSSLVYEAKARVADPVHGCAGVINNLQKKLEEVQSQ 102 7******************************************************************************************** PP DUF260 94 lallkee 100 la++k++ PSME_00022409-RA 103 LASAKAK 109 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.878 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-39 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSKVSREETA CAACKFHRKK CSEKCVLAPY LPHNDPNKFL LLHRLFGTGH VVKLLQELPA 60 EQRGDAVSSL VYEAKARVAD PVHGCAGVIN NLQKKLEEVQ SQLASAKAKL DNMSAQQSNF 120 IINLINSWDH QGNWDPNFES TLLQENQERQ SINPTVLDVE VDSLPLWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-34 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-34 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 5e-52 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-48 | LOB domain-containing protein 1 |