PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022392-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 438aa    MW: 48805.6 Da    PI: 5.3905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022392-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.3e-191461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd+llv++++++G g W+t +++ g+ R++k+c++rw +yl
  PSME_00022392-RA 14 RGPWTPEEDDLLVKYIQKHGEGGWRTLPKKAGLLRCGKSCRLRWMNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding48.61.8e-1572112648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++E++l+++++++lG++ W++Ia +m+ gRt++++k++w+++l
  PSME_00022392-RA  72 PDEEDLILRLHRLLGNR-WSLIAGRMP-GRTDNEIKNYWNTHL 112
                       89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-23563IPR009057Homeodomain-like
PROSITE profilePS5129417.858961IPR017930Myb domain
SuperFamilySSF466892.93E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-141363IPR001005SANT/Myb domain
PfamPF002498.0E-171461IPR001005SANT/Myb domain
CDDcd001677.12E-121661No hitNo description
PROSITE profilePS5129425.18762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2464117IPR009057Homeodomain-like
SMARTSM007174.9E-1466114IPR001005SANT/Myb domain
PfamPF002495.6E-1472112IPR001005SANT/Myb domain
CDDcd001677.85E-1272112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGRTPCCSKM GLNRGPWTPE EDDLLVKYIQ KHGEGGWRTL PKKAGLLRCG KSCRLRWMNY  60
LRPDVKRGQI LPDEEDLILR LHRLLGNRWS LIAGRMPGRT DNEIKNYWNT HLSKKLISEG  120
IDPRTHKPLA ESELEQLNGD RSNGVDNVNS EDTNNPTSDS QQIQLQETET AMSDNIESRK  180
VIDNICHSPE LSKNVNDNPD TSAIDSLHTA ATSSSSAKAT QSTYIGSEGT YSSAVSDLGK  240
GGKLLQQSIN GDGDVHINQH LQLPHCYATQ ELGVEGHDWS PYLRTNTLTS SFFMAPSSGL  300
DSTPPFPDQG YQTTARNALR GGHQYEGFST NFTQHRAVTE ETHQESYKEN DGANSCTLQA  360
NINPLGSTTE DCNSDIFSYF LESFMTEDQL LDEANYKHST PTSASVSQHM QHLSHAQAPN  420
HEYDMWSVMS PTPEYPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-26121162105C-Myb DNA-Binding Domain
1msf_C5e-26121162105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1110931e-169BT111093.1 Picea glauca clone GQ03232_J02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UB261e-124A0A222UB26_GINBI; R2R3MYB21
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-76myb domain protein 5