PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00022238-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HSF

Protein Properties

Length: 367aa MW: 41119.4 Da PI: 6.4115

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022238-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.3	8.1e-36	57	147	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+y++++d++++++isw++ g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg+k+ll PSME_00022238-RA 57 FLIKTYQLVDDSNTDDIISWNDAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFSNEFFRKGEKQLL 140 9***************************************************************99.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k PSME_00022238-RA 141 SEIHRRK 147 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-37	48	140	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.3E-58	53	146	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.91E-34	54	146	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.1E-20	57	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.2E-31	57	146	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	95	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	96	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	108	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
AFECFWRFSS FLSVLFLCYS EDCTVELSGG AMAQSAKQNN DVALVTVESH RSVPAPFLIK 60 TYQLVDDSNT DDIISWNDAG TTFIVWRPAE FARDLLPNYF KHNNFSSFVR QLNTYGFRKI 120 VPDRWEFSNE FFRKGEKQLL SEIHRRKGLI QPPPPPENRS ISPSNSADEQ TWSSTSSPNS 180 SSGVEALSHK NAMEENEKLK NENRVLVSEL TQMKKLHSQL LLFLSKHVNI PSADHVASFL 240 SQSVGPSEGL SMLARLKDYL EQYGGEEISK DFPGISLSSG VSVVNDDPFV SSSAKETMAA 300 KRLPFVDGAC REMGRKSYLS VKIEDDDEKE IPKLFGVPLV PSKRPLPVSN DNGKPEPIIR 360 KIGRCTN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

AFECFWRFSS FLSVLFLCYS EDCTVELSGG AMAQSAKQNN DVALVTVESH RSVPAPFLIK  60
TYQLVDDSNT DDIISWNDAG TTFIVWRPAE FARDLLPNYF KHNNFSSFVR QLNTYGFRKI  120
VPDRWEFSNE FFRKGEKQLL SEIHRRKGLI QPPPPPENRS ISPSNSADEQ TWSSTSSPNS  180
SSGVEALSHK NAMEENEKLK NENRVLVSEL TQMKKLHSQL LLFLSKHVNI PSADHVASFL  240
SQSVGPSEGL SMLARLKDYL EQYGGEEISK DFPGISLSSG VSVVNDDPFV SSSAKETMAA  300
KRLPFVDGAC REMGRKSYLS VKIEDDDEKE IPKLFGVPLV PSKRPLPVSN DNGKPEPIIR  360
KIGRCTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-23	52	146	25	129	Heat shock factor protein 1
5d5v_B	4e-23	52	146	25	129	Heat shock factor protein 1
5d5v_D	4e-23	52	146	25	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT112777	0.0	BT112777.1 Picea glauca clone GQ03320_N17 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269874.1	1e-72	PREDICTED: heat shock factor protein HSF24
Refseq	XP_010919270.1	2e-72	heat stress transcription factor B-2c
Swissprot	P22335	2e-66	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A0D6R3L9	1e-166	A0A0D6R3L9_ARACU; Uncharacterized protein
STRING	XP_010269874.1	5e-72	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	3e-60	heat shock transcription factor B4

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]