PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022169-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 392aa    MW: 44063 Da    PI: 5.0141
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022169-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.95.8e-34131471128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lp+G++F+P+d+el+  +L++kv   +      ++++   +ke  +i++++P++Lp  vk++ + ++fF++++k+y+tg+rk+r++++ +W++
  PSME_00022169-RA  13 LPAGVKFDPSDQELM-GHLAAKVGVGNskphplIDEFIPtLKEDdGICYTHPEKLP-GVKQDGSVCHFFHRTAKAYHTGNRKRRKIQEDRWHK 103
                       799************.789999876665676553333333555546**********.777888999*************************** PP

               NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       tgk+++v++ +g + g kk+Lv+y  +g+ +  ekt+Wvmh+y+l
  PSME_00022169-RA 104 TGKTRPVVE-NGIQRGWKKILVLYmsTGKGKMFEKTNWVMHQYHL 147
                       *********.99************7768888899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-384166IPR003441NAC domain
PROSITE profilePS5100532.32613166IPR003441NAC domain
PfamPF023655.8E-1514147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEKSEVAQEW PGLPAGVKFD PSDQELMGHL AAKVGVGNSK PHPLIDEFIP TLKEDDGICY  60
THPEKLPGVK QDGSVCHFFH RTAKAYHTGN RKRRKIQEDR WHKTGKTRPV VENGIQRGWK  120
KILVLYMSTG KGKMFEKTNW VMHQYHLGTE EDENDGEFVV SKIFYQQQHK QIDKNEEPQE  180
NDVPRETEFT SLVPIPDPLT PVTSTPELFR HAKSQADLAT AKEGQLDCMD SPGQVAGFHV  240
ASFEGNVSAN YLTCQGVNDQ TNYDSLQGVR DHSNVNMDDS PWQGLNCQGN ISLDDSTSLA  300
RESQLRVDSQ QLLDDFLHCA ETVQNPSPQN LILDPVEHGR IKAKELDKAV NACNAIPCLD  360
NIELDTPPDI ENIELNFNSQ ESLSAWTRDK AH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-121314715140Stress-induced transcription factor NAC1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1190330.0BT119033.1 Picea glauca clone GQ04013_K12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627944.11e-106SUPPRESSOR OF GAMMA RESPONSE 1 isoform X4
RefseqXP_020531157.11e-105SUPPRESSOR OF GAMMA RESPONSE 1 isoform X3
RefseqXP_020531159.11e-105SUPPRESSOR OF GAMMA RESPONSE 1 isoform X5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-89NAC family protein