PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00021974-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 28801.7 Da PI: 8.414 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.8 | 2.5e-26 | 4 | 96 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+l p++ +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG++g++ ++++ + PSME_00021974-RA 4 SCNGCRVLRKGCSESCILKPCLqwistAESQANATIFLAKFYGRAGLVNLISNGPEHLRPAIFRSLLYEACGRMVNPIYGSLGLVCSGNWAAR 96 6*********************9999777899********************************************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.661 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-22 | 4 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSESCI LKPCLQWIST AESQANATIF LAKFYGRAGL VNLISNGPEH 60 LRPAIFRSLL YEACGRMVNP IYGSLGLVCS GNWAARLQAG VESILRGNWA PHILPMEAMA 120 GRKVQRSVKA RGRFKGFSHG KSKRNEGERE PASDHIDSSS KSDGWGDITN VLEKAAENGE 180 FDGKYVDKYS TFLSSREHER FGTANQAKIE YCHDLCNLKT SETEAEAPCN AVELELTLGS 240 HVSFLRTADK LSAGEWRPPL Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010263769.1 | 2e-60 | PREDICTED: LOB domain-containing protein 41-like | ||||
TrEMBL | A0A1U8AE09 | 4e-59 | A0A1U8AE09_NELNU; LOB domain-containing protein 41-like | ||||
STRING | XP_010263769.1 | 7e-60 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 4e-58 | LOB domain-containing protein 40 |