PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021971-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 270aa    MW: 29843 Da    PI: 7.5016
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021971-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.14e-2615112193
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+ +Cvl+p++     +++q++++ +++k++G+s +++l+++ pe+ r+ +++sl+yeA+ r+ +P+yG++g++ ++++  +
  PSME_00021971-RA  15 SCNGCRVLRKGCSYSCVLRPCLhwistAESQANATIFLAKFYGRSGLVNLISSGPEHLRPGIFRSLLYEACGRMVNPIYGSLGLFCSGKWAEC 107
                       6*********************9999778899**********************************************************999 PP

            DUF260  89 qlkae 93 
                       q+ +e
  PSME_00021971-RA 108 QAGVE 112
                       98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.88714120IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-2115111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSCLFLPEHI IMRMSCNGCR VLRKGCSYSC VLRPCLHWIS TAESQANATI FLAKFYGRSG  60
LVNLISSGPE HLRPGIFRSL LYEACGRMVN PIYGSLGLFC SGKWAECQAG VESILRGTFG  120
AVTQGDTAPS HILPIEAMPS ALHRTRGRGR LKGLSKSKHK VKEGELAAIS NHMDSSSKSD  180
DSAALTNVFE KVDNGKLHEN YGEKYSMFLR GQEVQEEFFA PQPQTHLEPP RKAIELELTL  240
GSRGSSPSTP DQELAGDLPW SEAHWDQWME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024983995.15e-61LOB domain-containing protein 41-like
TrEMBLA0A200Q3F62e-60A0A200Q3F6_9MAGN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.17e-58LOB domain-containing protein 40