PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021789-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 505aa    MW: 55845.6 Da    PI: 7.9814
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021789-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.61.3e-08184208529
                       CHHHCHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeie 29 
                       k  rr+++NReAAr+sR+RKka++e
  PSME_00021789-RA 184 KTLRRLAQNREAARKSRLRKKASVE 208
                       788*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.0E-4185207No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
PfamPF141442.6E-34302377IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MANKIDEQVT AASSYVRSVS LGMQSFAPPL VSHTIGTFGT EASKGYFGEL EQTVGFHLDD  60
VGNLAGKSSG VNSRPAVNIN HSGALQIAGL NKVQHPPDFT AAVNSVESRH HSSHRGGTQS  120
GGFVSTSGNR IDTWEDSLMA DTSPRTDDTS TDVDTDDKVN QQMDLVRHGG DSSDRTKDKN  180
GDQKTLRRLA QNREAARKSR LRKKASVEPR RGENRHFVLT TQARPHWLSH TILKIQAYVQ  240
QLESSRLKLT QLEQELQRAR QQGIFIGGSV GDQSHSMTGN GIHCALAFDM EYARWLDEHH  300
RQINDLRSAV NSHVGDNELR VLVEGVMAHY DEIFRLKSVA AKSDVFHLVS GMWKTPAERC  360
FMWMGGFRPS ELLKILVTHL EPLTEHQFMG INNLQHSSQQ AEDALSQGMD ALQQSLAETL  420
ASGSLGPPGT SGNVANYMGQ MAMAMGKLGT LEGFVHQADN LRQQTLQQMH RILTTRQAAR  480
AFLAISDYFS RLRALSSLWL ARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2027180.0HM202718.1 Picea sitchensis isolate RW100 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027190.0HM202719.1 Picea sitchensis isolate RW101 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027200.0HM202720.1 Picea sitchensis isolate RW200 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027220.0HM202722.1 Picea sitchensis isolate RW300 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027230.0HM202723.1 Picea sitchensis isolate RW301 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027240.0HM202724.1 Picea sitchensis isolate RW400 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027250.0HM202725.1 Picea sitchensis isolate RW401 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027260.0HM202726.1 Picea sitchensis isolate VA100 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027270.0HM202727.1 Picea sitchensis isolate VA101 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027290.0HM202729.1 Picea sitchensis isolate VA201 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027310.0HM202731.1 Picea sitchensis isolate VA301 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027320.0HM202732.1 Picea sitchensis isolate VA400 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027330.0HM202733.1 Picea sitchensis isolate VA401 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027340.0HM202734.1 Picea sitchensis isolate VD100 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027350.0HM202735.1 Picea sitchensis isolate VD101 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027360.0HM202736.1 Picea sitchensis isolate VD200 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027370.0HM202737.1 Picea sitchensis isolate VD201 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027380.0HM202738.1 Picea sitchensis isolate VD300 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027390.0HM202739.1 Picea sitchensis isolate VD301 bZIP transcription factor-like protein mRNA, partial cds.
GenBankHM2027400.0HM202740.1 Picea sitchensis isolate VD400 bZIP transcription factor-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826801.10.0transcription factor TGA2.3
RefseqXP_011621010.10.0transcription factor TGA2.3
SwissprotQ415581e-176HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D6QSB10.0A0A0D6QSB1_ARACU; Uncharacterized protein
STRINGERM940380.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-134bZIP family protein