PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021756-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 477aa    MW: 52841.6 Da    PI: 6.3148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021756-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.8e-153381254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ rgr++AeI dp++   + r +lg++gtaeeAa a++ a++++ 
  PSME_00021756-RA 33 RYRGVRRRP-RGRFAAEIGDPKT---KERRWLGTYGTAEEAACAYDFAARAMS 81
                      69*******.8*********954...4999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-93382IPR001471AP2/ERF domain
PROSITE profilePS5103219.8233390IPR001471AP2/ERF domain
SMARTSM003809.7E-293396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-243389IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-173390IPR016177DNA-binding domain
PRINTSPR003672.2E-63445IPR001471AP2/ERF domain
CDDcd000186.68E-174589No hitNo description
PRINTSPR003672.2E-65672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MKSQQQSELQ KNESLSPNKL SEKQFKRGKE AGRYRGVRRR PRGRFAAEIG DPKTKERRWL  60
GTYGTAEEAA CAYDFAARAM SGIKARTNFI YLNSEHCMLS TATPPASLTG STFPTNINDP  120
FSHKPQKLKD SWLDCLWRAS STTRPGPCNE AKQQQRKQQF SVNGGYNMLG NTVSSWRPSN  180
NEIENNNNQL LAGAGSSSVV PVSLPRDHHS INASTWQNLP LADPLVLSLS KNTIDHTHRS  240
TIPFPVSSST ACSSVTKITD HKPAFNNNIT ITPEIAIPLS NPVESVYFLP CLEDPASELC  300
SPASPYSYTL SCNVEHQFQN LADSNGHSDS GLLDQIISGY LPMSVSATSP ASSVCIPKYF  360
SNNNTLNCAD CVPQDNYSTI TPTCSGFNTT DHIMADLERF IETNYIGLYC NPEAQQQPQD  420
QQHQLEANNF NSTHFSAPYP YTDYLFSMPP ISDALEEVLH LTPELFDSQQ YGNGYYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-162889971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-09DORNROSCHEN-like