PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021722-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 247aa    MW: 28874.1 Da    PI: 7.5683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021722-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-0877121755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +E+ RR+r++s   +L +llP+ +      Kl+     e+A++YI++L+
  PSME_00021722-RA  77 FAEQMRRKRMKSLCTQLESLLPStP-----AKLDRCGLFEEAINYIRKLE 121
                       58*********************55.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.36670120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-670122No hitNo description
SuperFamilySSF474597.46E-1171133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1172134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-476126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-678121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASDCLFSYS LPAATRTLMY SNVSKCDRQL DFRVTASRKR PSEIDLVELQ VYTDLQEKVW  60
RDVDHMMKFS TKETQIFAEQ MRRKRMKSLC TQLESLLPST PAKLDRCGLF EEAINYIRKL  120
EENMHQLKKK KDSLLAIQSG KTVNENTEIK VAVQFYGREA IINISGERGP RHMWRILEEL  180
ENHGLDVETS QLFTGEFFVL VFFHVKFREN ISQDPAEIQT SLEYCFVVMH KSHGMTVSNY  240
FHFTSSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0864590.0EF086459.1 Picea sitchensis clone WS02745_D02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-132A9NYK8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-09bHLH family protein