PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021697-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 629aa    MW: 69907.5 Da    PI: 6.9957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021697-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-18153200148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  PSME_00021697-RA 153 KGPWTPEEDQKLIAYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYL 200
                       79******************************99************97 PP
2Myb_DNA-binding52.11.6e-16206251148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  PSME_00021697-RA 206 RGKFSVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 251
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24144203IPR009057Homeodomain-like
PROSITE profilePS5129416.772148200IPR017930Myb domain
SuperFamilySSF466896.6E-30150247IPR009057Homeodomain-like
SMARTSM007172.1E-14152202IPR001005SANT/Myb domain
PfamPF002491.1E-16153200IPR001005SANT/Myb domain
CDDcd001673.51E-11155200No hitNo description
PROSITE profilePS5129426.311201255IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-26204256IPR009057Homeodomain-like
SMARTSM007175.3E-17205253IPR001005SANT/Myb domain
PfamPF002497.3E-16206251IPR001005SANT/Myb domain
CDDcd001679.74E-12208251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDLERSFSSP TSTETIVLRD NDVTDVLIHP LGDTSKLDPL IDYVYIDFSK KGYKVIDGIE  60
RLSSVGCIDT CPFVDLPRAR ATNVSPSLLI SICEGPVVGS GGVWKYPLGL KVFNSTAALR  120
VRKVREVYSS QHQTKWREIM GRAPCCEKVG LKKGPWTPEE DQKLIAYIQE HGHGSWRALP  180
QKAGLLRCGK SCRLRWANYL RPDIKRGKFS VQEEQTIIQL HALLGNRWSA IATHLPKRTD  240
NEIKNYWNTH LKKRLVQMGI DPVTHKPKSE SSIPAGAQSF NGSSNVSHMA QWESARLEAE  300
SRLARESKLR TRGIWSGSLR NVNVSADIFS RLRRASQMFD SDKEESKIPG LDTAGGFECM  360
KRTQKWDKFL DLRPGTKLDQ SIHSSALGGL FSVYNPVENG QSEDRAIKTS YLDLLQQAMC  420
PSAQASKILF NETKKLVESQ KNRQANAATT PHWNGYHIDE SEYCDEKKPT IDSEKAYSDV  480
QSSSLHEENV EPADSHHELL LPSVMLNDGN CSSARSDVSE LTKTEQGADA SYDKVGNSDN  540
ILSEFQHIHS DEISSSGGFK SGSSYDGFNA DMLLDLVVPP PNGYSTAVCG DTRSMSGLSV  600
DDNKEYWSNM FSVCNSLPNG SHSGVQSIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-261512555108B-MYB
1h8a_C2e-2613125512128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAC00.0A0A222UAC0_GINBI; R2R3MYB16
TrEMBLA9P0V40.0A9P0V4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-101myb domain protein 16