PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00021671-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 1143aa MW: 129591 Da PI: 6.6192

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00021671-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	974	1014	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT E l+++a ++G++ + +I++++ Rt+ qc+ ++ k PSME_00021671-RA 974 WTDNEKCLFINALGKYGKD-FQSISSHVH-SRTEDQCRTFFCK 1014 ***************99.*****.******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.95E-13	736	798	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.032	748	799	IPR017884	SANT domain
SMART	SM00717	4.7E-5	749	797	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	15.718	969	1020	IPR017884	SANT domain
SMART	SM00717	1.3E-6	970	1018	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.29E-10	970	1019	IPR009057	Homeodomain-like
Pfam	PF00249	9.5E-7	973	1014	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-6	973	1014	IPR009057	Homeodomain-like
CDD	cd00167	2.39E-5	974	1014	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1143 aa Download sequence Send to blast
MQFPSYKKRR FPEDDNTSLR FEGRHTIGKE TTGFFIDSRY QRNARKLHHW KSEENCMFSP 60 DKHHILRGKS VEMPFHFTRL CDAEDSWQQE QSKKLSTRDL ELYSKTDREF SSRKYYKFGT 120 NKRGFDDHFG RFTEKDLGAR HDMYSALGKN ADIVDGFRSI PRGSQLTSFL PNMPASSRSA 180 NLRSWSSVSD YVEHSNELRR DRELGEFGTK PRHKFYLKST SSICHGTNDK FRQQKRPRLG 240 WGEGLAKYEN QSVDGDYIDK NGFIQSKNCA SQEDGYSQGP NDESESPEPI LASTQCKPSK 300 PLDSLTSISL PDEHAYAFGD GSSKSADCEK LCNDIPSTCK HGEFSLLAEG TLPVCISQIP 360 DAEDPLDAQY LDSNSFAPVN SKTSDTFEIQ YPSERQLELK NEILQKLERV ECEFDRVEKE 420 LGCLNSEIQT EDCHSGGVDI SVYCSQGAFT EVDEKRSLKD LSGSIKVSSS GYINKNRIIV 480 PSLASKSDEV GVRNQCFIEL PFEYQRRVTE DSKPVMWAVG RQSTVGINSM DANLEDEAVE 540 SQLAVAEDSS SYSSIKANSR ATSQLNSNVG SSVLFNSTPL PASSASGAWL LSSEVSQMSV 600 WKQNTVVHER NRKQMEEKIV ERKRFLNFKE QMLALKFRIL REWREKEQLV LSPRKGRGKY 660 HQIDGFFSSV HLPSYQFQSS LQGALTLVPT SQQGLLERRR ALDVHLNNYR AFLKMPAMTL 720 DDRWRRFPRI LTNNGLVEDP VAVEKERKVI NPWTSEEKAL FWAKFAIFRK NFGKVASFLE 780 HKTVADCIEF YYKNHKSEDP KKSKKRQSLR KQESNFFARP YLSTLGNRRC HISYATSLDV 840 LGAAVALTMD DTNQKNRIQG ALQMCNGTQM PLVSKKIRSE VCGKHDNDRT TDTYFLGSET 900 EFTAAADVLA GTYPEAIGSC ICSAADIPET FDKKPHDKRF MIKADGIDLP QTSEADFENC 960 NSTAECHEDI YTDWTDNEKC LFINALGKYG KDFQSISSHV HSRTEDQCRT FFCKSRKALK 1020 LDEVVSQEPV IQRKSAADLN PGLSEMYVDD MSLSNVPASD KTTETFKSHV IDAARQSSRT 1080 EIGLDEAAQV YHPHNIIESE DCKVAQDEEI ELEEQWKICK RNLAGVSMEA SAHQEAKSML 1140 GGA

Sequence ? help Back to Top

Protein Sequence Length: 1143 aa Download sequence Send to blast

MQFPSYKKRR FPEDDNTSLR FEGRHTIGKE TTGFFIDSRY QRNARKLHHW KSEENCMFSP  60
DKHHILRGKS VEMPFHFTRL CDAEDSWQQE QSKKLSTRDL ELYSKTDREF SSRKYYKFGT  120
NKRGFDDHFG RFTEKDLGAR HDMYSALGKN ADIVDGFRSI PRGSQLTSFL PNMPASSRSA  180
NLRSWSSVSD YVEHSNELRR DRELGEFGTK PRHKFYLKST SSICHGTNDK FRQQKRPRLG  240
WGEGLAKYEN QSVDGDYIDK NGFIQSKNCA SQEDGYSQGP NDESESPEPI LASTQCKPSK  300
PLDSLTSISL PDEHAYAFGD GSSKSADCEK LCNDIPSTCK HGEFSLLAEG TLPVCISQIP  360
DAEDPLDAQY LDSNSFAPVN SKTSDTFEIQ YPSERQLELK NEILQKLERV ECEFDRVEKE  420
LGCLNSEIQT EDCHSGGVDI SVYCSQGAFT EVDEKRSLKD LSGSIKVSSS GYINKNRIIV  480
PSLASKSDEV GVRNQCFIEL PFEYQRRVTE DSKPVMWAVG RQSTVGINSM DANLEDEAVE  540
SQLAVAEDSS SYSSIKANSR ATSQLNSNVG SSVLFNSTPL PASSASGAWL LSSEVSQMSV  600
WKQNTVVHER NRKQMEEKIV ERKRFLNFKE QMLALKFRIL REWREKEQLV LSPRKGRGKY  660
HQIDGFFSSV HLPSYQFQSS LQGALTLVPT SQQGLLERRR ALDVHLNNYR AFLKMPAMTL  720
DDRWRRFPRI LTNNGLVEDP VAVEKERKVI NPWTSEEKAL FWAKFAIFRK NFGKVASFLE  780
HKTVADCIEF YYKNHKSEDP KKSKKRQSLR KQESNFFARP YLSTLGNRRC HISYATSLDV  840
LGAAVALTMD DTNQKNRIQG ALQMCNGTQM PLVSKKIRSE VCGKHDNDRT TDTYFLGSET  900
EFTAAADVLA GTYPEAIGSC ICSAADIPET FDKKPHDKRF MIKADGIDLP QTSEADFENC  960
NSTAECHEDI YTDWTDNEKC LFINALGKYG KDFQSISSHV HSRTEDQCRT FFCKSRKALK  1020
LDEVVSQEPV IQRKSAADLN PGLSEMYVDD MSLSNVPASD KTTETFKSHV IDAARQSSRT  1080
EIGLDEAAQV YHPHNIIESE DCKVAQDEEI ELEEQWKICK RNLAGVSMEA SAHQEAKSML  1140
GGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-16	710	801	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-16	710	801	4	94	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT105379	1e-179	BT105379.1 Picea glauca clone GQ02821_K16 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-56	MYB family protein