PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021520-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 607aa    MW: 68330.9 Da    PI: 6.6521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021520-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-17169215148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd ll ++v+++G   W+ Ia+++  gR +kqc++rw+++l
  PSME_00021520-RA 169 KGQWTAEEDSLLMKLVEKHGVQKWSQIAQHLV-GRVGKQCRERWHNHL 215
                       799*****************************.*************97 PP

2Myb_DNA-binding54.92e-17221263145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       r+ W++eE++ lv+a+++lG++ W+ I ++++ gRt++ +k++w+
  PSME_00021520-RA 221 RDVWSAEEEQMLVQAHAELGNK-WAEITKHLP-GRTENAIKNHWN 263
                       789*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
PROSITE profilePS5129429.909164219IPR017930Myb domain
SuperFamilySSF466891.54E-31166262IPR009057Homeodomain-like
SMARTSM007171.7E-15168217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-28170222IPR009057Homeodomain-like
CDDcd001672.45E-14172215No hitNo description
PfamPF139212.2E-20172232No hitNo description
PROSITE profilePS5129420.722220270IPR017930Myb domain
SMARTSM007171.7E-16220268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-21223268IPR009057Homeodomain-like
CDDcd001672.30E-12224266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MIPRISDCRP SLSCKEWGLD YCTGVLGGLG SSCLRSQDDK GAYVVTERNM AVAETASAFI  60
EGQCWAQPDN EVFNDFMRLN SDYRLQKLPY CYNSSNSSNS HGDPRNQISS TLLHDLGAIP  120
DLSNVAGSRL DEESCITGNQ PSVKAGLTWR NSSSTKRSGK THKKTNVVKG QWTAEEDSLL  180
MKLVEKHGVQ KWSQIAQHLV GRVGKQCRER WHNHLRPNIK RDVWSAEEEQ MLVQAHAELG  240
NKWAEITKHL PGRTENAIKN HWNATKRRQT ARRKARRSNI LDGLSCNVDN HNQKSTILRD  300
YIRSLNLLDE NKKEDCFSNN ISQKPSSIHK EDAAESMVAI SEDMSSSDVD HFLYKTAYGS  360
CTEHYSGTNA VHQQPSAINQ SPTDQTYKQY STQNVMVNRC DIDVYQLNEP VKWSSTEILD  420
KITSTVELAN QKEEMNSNFW EHDRDKTNID LSIFCSPKKP CDYNNSSNNL QFNCFCSLHQ  480
SNLGNPFLST NSADQLLGYA LGTLDSTASL SSSPLPGFDL DGPDHHGKVH FCNRNFSSIA  540
NQAALDPESM YPDINISYLV NEVDARHGMD NSSLDSLWLS SKYTMQNSPN QPKREMDLIE  600
MIRGSSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-421672692104C-Myb DNA-Binding Domain
1msf_C1e-421672692104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-49myb domain protein 98