PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00021520-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 607aa MW: 68330.9 Da PI: 6.6521 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 169 | 215 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll ++v+++G W+ Ia+++ gR +kqc++rw+++l PSME_00021520-RA 169 KGQWTAEEDSLLMKLVEKHGVQKWSQIAQHLV-GRVGKQCRERWHNHL 215 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 221 | 263 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ W++eE++ lv+a+++lG++ W+ I ++++ gRt++ +k++w+ PSME_00021520-RA 221 RDVWSAEEEQMLVQAHAELGNK-WAEITKHLP-GRTENAIKNHWN 263 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 33 | No hit | No description |
PROSITE profile | PS51294 | 29.909 | 164 | 219 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-31 | 166 | 262 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 168 | 217 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-28 | 170 | 222 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-14 | 172 | 215 | No hit | No description |
Pfam | PF13921 | 2.2E-20 | 172 | 232 | No hit | No description |
PROSITE profile | PS51294 | 20.722 | 220 | 270 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 220 | 268 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 223 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.30E-12 | 224 | 266 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MIPRISDCRP SLSCKEWGLD YCTGVLGGLG SSCLRSQDDK GAYVVTERNM AVAETASAFI 60 EGQCWAQPDN EVFNDFMRLN SDYRLQKLPY CYNSSNSSNS HGDPRNQISS TLLHDLGAIP 120 DLSNVAGSRL DEESCITGNQ PSVKAGLTWR NSSSTKRSGK THKKTNVVKG QWTAEEDSLL 180 MKLVEKHGVQ KWSQIAQHLV GRVGKQCRER WHNHLRPNIK RDVWSAEEEQ MLVQAHAELG 240 NKWAEITKHL PGRTENAIKN HWNATKRRQT ARRKARRSNI LDGLSCNVDN HNQKSTILRD 300 YIRSLNLLDE NKKEDCFSNN ISQKPSSIHK EDAAESMVAI SEDMSSSDVD HFLYKTAYGS 360 CTEHYSGTNA VHQQPSAINQ SPTDQTYKQY STQNVMVNRC DIDVYQLNEP VKWSSTEILD 420 KITSTVELAN QKEEMNSNFW EHDRDKTNID LSIFCSPKKP CDYNNSSNNL QFNCFCSLHQ 480 SNLGNPFLST NSADQLLGYA LGTLDSTASL SSSPLPGFDL DGPDHHGKVH FCNRNFSSIA 540 NQAALDPESM YPDINISYLV NEVDARHGMD NSSLDSLWLS SKYTMQNSPN QPKREMDLIE 600 MIRGSSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-42 | 167 | 269 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-42 | 167 | 269 | 2 | 104 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 7e-49 | myb domain protein 98 |