PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00021444-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28237.6 Da PI: 6.9429 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ +G + W+ I+ + g++R++++c++rw++yl PSME_00021444-RA 14 RGAWTKEEDIILSEYIRIHGDDpGWTNIPPKTGLKRSGNSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00021444-RA 68 RGNISPDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.332 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.29E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.336 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.17E-13 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGRSPCCSTE GLRRGAWTKE EDIILSEYIR IHGDDPGWTN IPPKTGLKRS GNSCRLRWLN 60 YLRPDIKRGN ISPDEEELII RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN THLGKKVLSM 120 NEPDPNSRTQ KLKRIRSQSP SPVQNHVIKT IPVKITMAAR HSEMVRPVDF NSYGCSNYTS 180 SEHETFKTPE PQESGPHFDH FEGDTATLDE SLFDLNELSS PQWNVLFSPS VSSTDLGFEE 240 FCSGRGDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-22 | 12 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899027.1 | 6e-67 | transcription factor TT2-like | ||||
Swissprot | Q9S9K9 | 1e-58 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V911 | 4e-94 | A0A167V911_PICAB; Transcription factor MYB31 | ||||
STRING | GLYMA13G16890.1 | 7e-64 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-52 | myb domain protein 3 |