PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00021355-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 34202.7 Da PI: 8.8715 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WTt Ed +l ++++ +G g Wk I+++ g +R++k+c+ rw++yl PSME_00021355-RA 14 RGAWTTMEDRILSEYIRIHGDGGWKNIPKRAGIKRCGKSCRMRWLNYL 61 89******************************55************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++++ PSME_00021355-RA 67 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.588 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.97E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.258 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.76E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGRSPCPSKE GLSRGAWTTM EDRILSEYIR IHGDGGWKNI PKRAGIKRCG KSCRMRWLNY 60 LRPDIKRGNI SPDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HMSKKLRLSI 120 NKCQPQTSQN HSTISKASAR VQNRVFKATA SKITKPVRYF ELLRPNGYNG YVCSERRSHE 180 AFKLCNIKET RKSSLPDLLL NDSIGNEESE HIAFAMVDNL VETGATISTS SVSSLADQQS 240 PHSHHLDESL LYLNDQLSPV CNQLPFPSEC STDFASEYFY RGMEELYDWI FEFDNLQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116752 | 1e-110 | BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence. | |||
GenBank | KU131219 | 1e-110 | KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 1e-133 | B8LMJ6_PICSI; Uncharacterized protein | ||||
STRING | GLYMA13G16890.1 | 2e-70 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-59 | myb domain protein 3 |