PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021295-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 637aa    MW: 71334.5 Da    PI: 9.5695
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021295-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-13180227255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +ykGV    ++grW ++I++      + +r++lg+f+ +e+Aaka+++a++k++g
  PSME_00021295-RA 180 QYKGVV-PQSNGRWGSQIYE------NhRRVWLGTFDQEEDAAKAYDRAALKFRG 227
                       6999*6.6779******999......44*************************98 PP
2B392.43.3e-29340442199
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k+ltpsdv+k++rlv+pk++ae++    g+++e++  l +ed + ++W+++++y+ +s++yvltkGW++Fvk + L++gD++ F+    ++
  PSME_00021295-RA 340 FDKALTPSDVGKLNRLVIPKQHAEKYfpldGNSSEKGLLLDFEDDTRKVWRFRYSYWSSSQSYVLTKGWSGFVKNKTLETGDILSFYKGFAQS 432
                       89****************************88889999*************************************************555588 PP

                       E..EEEEE-S CS
                B3  90 felvvkvfrk 99 
                       ++++++++r+
  PSME_00021295-RA 433 GQFYISWRRN 442
                       8889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-24179234No hitNo description
PROSITE profilePS5103219.862180235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-20180235IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-16180235IPR016177DNA-binding domain
SMARTSM003809.1E-28180241IPR001471AP2/ERF domain
PfamPF008471.6E-7181227IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.4E-37335447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-26336437IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-20338441No hitNo description
PROSITE profilePS5086313.987340443IPR003340B3 DNA binding domain
PfamPF023624.8E-26340442IPR003340B3 DNA binding domain
SMARTSM010199.1E-22340443IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MYITFFKEVM RCSFNVSRLR VMTNLQGRGK RSASTAITLL GSEIDSADVM QSSACCPTDV  60
KMRFAIYSEK NASLSITTDH VLCRQNQSPR DKMMVAECSN SQDDDVGSLM YSENGRQPKQ  120
KAELFKDRGS PRSMEKNLRG MERMGRGLSV VSGFGAELDG FDLRRYSMSM QQAGKLPSAQ  180
YKGVVPQSNG RWGSQIYENH RRVWLGTFDQ EEDAAKAYDR AALKFRGRDA MTNFSPIRDG  240
DPEARFMREH SDEEIVEMLR KHTYDAELEH HSKMTMMTEA RSASVNNAEA SGIEGSGLKA  300
HVCQENLWTV DTNPNVSCSA SAAAAAAAID MWGLPREHLF DKALTPSDVG KLNRLVIPKQ  360
HAEKYFPLDG NSSEKGLLLD FEDDTRKVWR FRYSYWSSSQ SYVLTKGWSG FVKNKTLETG  420
DILSFYKGFA QSGQFYISWR RNPSGQTGLG LNPRYKKSNA EVVYPVKGSS FLNPFNSHTQ  480
TPVVYNAAQW MPIIWPGSSI IPNALNKISH VAALKSQRSV APLNGAIPFY FSAQPTKQTS  540
QSRIYDNNSN RLQAMDLYLN PQMSLNSSDG KTNINPLHPV VKHALPSTAQ ELETPEHKTA  600
SSLDPATKKR VRLFGVTLAE PRRLSTQQHG QLNLFPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-473364434114B3 domain-containing transcription factor NGA1
5os9_B2e-473364434114B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.13e-85related to ABI3/VP1 1