PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021294-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 620aa    MW: 69367.5 Da    PI: 7.0171
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021294-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11.1e-13175223155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f  +e+Aaka+++a++k++g
  PSME_00021294-RA 175 SHYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNKEEDAAKAYDRAALKFRG 223
                       79****9888.8*********3.....5*************************98 PP
2B3100.11.3e-31328431199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+ tpsdv+k++rlv+pk++ae++      +  + ++  l +ed +g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++  +
  PSME_00021294-RA 328 FDKAVTPSDVGKLNRLVIPKQHAEKYfpldvnS--SDKGLLLNFEDNTGKAWRFRYSYWNSSQSYVLTKGWSRFVKDKKLEAGDIVSFQRGLQ 418
                       89***************************9643..447789************************************************8844 PP

                       .SEE..EEEEE-S CS
                B3  88 .sefelvvkvfrk 99 
                        ++++l+++++r+
  PSME_00021294-RA 419 aQSEQLYISWRRR 431
                       499999****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.91E-26175230No hitNo description
SuperFamilySSF541711.5E-17175231IPR016177DNA-binding domain
PfamPF008471.3E-8175223IPR001471AP2/ERF domain
SMARTSM003802.5E-29176237IPR001471AP2/ERF domain
PROSITE profilePS5103220.323176231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-21176231IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.8E-40319432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-28324416IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-25326415No hitNo description
SMARTSM010192.7E-22328432IPR003340B3 DNA binding domain
PfamPF023621.2E-28328431IPR003340B3 DNA binding domain
PROSITE profilePS5086315.016328432IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MMDLQGRGKR SAATTSLWQS EIDSPHVELS LGASCQASDV ETIICSQKNA SASTPTIHVL  60
GRQDQYARVE AQEHTTNEAM KDQEDNQDDE MGSAMTEEFN YSVMAVSENE KQPKLEAALF  120
KDWCSARSME KNLQGLDRMG SGISVLSVSG GESKGFDDLR RYSMPMDQAG KLPSSHYKGV  180
VPQPNGRWGA QIYEKHQRVW LGTFNKEEDA AKAYDRAALK FRGRDAMTNF SPVEDSDPEA  240
RFMNEHNKRQ IVDMLRKHTY DEELDHHSKR FKMIAARSVA MNNAEVSGLG AHDVCQENQV  300
SVDENMNAAS SSTAPVADRA GLPREHLFDK AVTPSDVGKL NRLVIPKQHA EKYFPLDVNS  360
SDKGLLLNFE DNTGKAWRFR YSYWNSSQSY VLTKGWSRFV KDKKLEAGDI VSFQRGLQAQ  420
SEQLYISWRR RPPCQPRLGV GTQSLQSKGG SVYPVKNLSF LHPFNSGTPV VYDAQWMPIF  480
WPSSTNPDAF TQLNSHFVSP IVNKVDALWS QSPVTTLNGA LPFYFPASPT NQMLQSRFYN  540
NNSDGCQPMV DLVNQHNSIN PCNGNTNIKP LHPFVNAARP YSADELETPE HKSASSLDPA  600
RKKGVRLFGV TLSELPHRLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-563244324114B3 domain-containing transcription factor NGA1
5os9_B1e-563244324114B3 domain-containing transcription factor NGA1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QRH41e-117A0A0D6QRH4_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.18e-98related to ABI3/VP1 1