PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00021090-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 516aa MW: 57223 Da PI: 7.4475

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00021090-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.4e-31	261	314	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PSME_00021090-RA 261 PRMRWTSTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 314 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-15	258	315	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-28	259	314	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-23	261	314	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	262	313	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MLQEEIINDI SRPSGVITRC GGDLDLSLQI RPPNSKPVSA TSTGGAERRD LIGLDLWRRG 60 NTVKSNSTSL TESSVITNLS SGSDRSQEDA SSLNFCFPNP GGLIDYNHLE SESRPTGFQD 120 EGRGLGFDHT TTAPRHSLGL VHGIVPIWIN NPLKTENSGK VLVDKSLDFP GLREDPEPRI 180 GDLTGSYIER LGRDIENQHR EALSRLLEAD HQNINRNSEI VSSENCGLIP SSAVAPSPGA 240 PNAFRSRFMS KMPSKRSMRA PRMRWTSTLH AHFVHAVELL GGHERATPKS VLELMNVKDL 300 TLAHVKSHLQ MYRTLKTTDK PAGPCDAFEV SSMKKSEDFM ATYRVSSKQY NKSLSCNGEM 360 DLGPIQVTPR QHAAPFNENQ QRLQQNYFQN LHNNISSRGN WSRNLFKDWQ LPSVNSLCLP 420 RTGSSIDQNE VDFSGYQGNH QYIGSLEQKR QVDGHLLNNL PQFPNSSSAI KPQSGSSQLI 480 NPKVANFPDL DITLGRSGWQ LAEHSDCPQE LPLLKC

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MLQEEIINDI SRPSGVITRC GGDLDLSLQI RPPNSKPVSA TSTGGAERRD LIGLDLWRRG  60
NTVKSNSTSL TESSVITNLS SGSDRSQEDA SSLNFCFPNP GGLIDYNHLE SESRPTGFQD  120
EGRGLGFDHT TTAPRHSLGL VHGIVPIWIN NPLKTENSGK VLVDKSLDFP GLREDPEPRI  180
GDLTGSYIER LGRDIENQHR EALSRLLEAD HQNINRNSEI VSSENCGLIP SSAVAPSPGA  240
PNAFRSRFMS KMPSKRSMRA PRMRWTSTLH AHFVHAVELL GGHERATPKS VLELMNVKDL  300
TLAHVKSHLQ MYRTLKTTDK PAGPCDAFEV SSMKKSEDFM ATYRVSSKQY NKSLSCNGEM  360
DLGPIQVTPR QHAAPFNENQ QRLQQNYFQN LHNNISSRGN WSRNLFKDWQ LPSVNSLCLP  420
RTGSSIDQNE VDFSGYQGNH QYIGSLEQKR QVDGHLLNNL PQFPNSSSAI KPQSGSSQLI  480
NPKVANFPDL DITLGRSGWQ LAEHSDCPQE LPLLKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-17	262	316	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	262	316	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	262	316	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	262	316	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123184	1e-128	BT123184.1 Picea sitchensis clone WS0467_N16 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-42	G2-like family protein