PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020936-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28834.6 Da PI: 6.8659 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 15 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 r +WTt Ed++l ++++ +G + +W++I+ + g++R++k+c++rw +yl PSME_00020936-RA 15 RRPWTTAEDLILREYINIHGLEgRWSSIPLKAGLNRSAKSCRLRWMNYL 63 679*****************999************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t+E+el+ +++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00020936-RA 69 RGNISTDEEELIFRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.674 | 10 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-14 | 15 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.68E-9 | 17 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 17 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.18 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRPSRCSKE DGLNRRPWTT AEDLILREYI NIHGLEGRWS SIPLKAGLNR SAKSCRLRWM 60 NYLCPNIKRG NISTDEEELI FRLHRLLGNR WSLIAGRLPG RTDNEIKNYW NTHLKKKVAI 120 RLNKRDRIQD KMTEKDFASG MDFVRANQVA VNIENHLSDV QSFDEEWRTM FENHLSDVQS 180 FDEEWSTMLE AHSFTNSFSG IPDVSVKDWK CPHMEMFSCF TGIISEGCAV ESSPSPISSS 240 IDFLINGTSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 13 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K9LYX2 | 3e-56 | K9LYX2_9ASPA; R2R3 MYB (Fragment) | ||||
STRING | VIT_09s0002g01400.t01 | 5e-54 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-51 | myb domain protein 5 |