PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020912-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 130aa MW: 15294.3 Da PI: 6.2491 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36 | 1.2e-11 | 52 | 128 | 17 | 96 |
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p f++++ +g++ +t+ed +g sW+++ y ++++r v+t GW +F+++++ k+gD+++ + +++ f ++++ PSME_00020912-RA 52 YFPIMFMTKYlSGSQ---GIVTFEDCDGFSWRIEWyAYLQSGRRLVFTIGWYKFASDHNAKDGDIFLVEILNSNHF--KFQI 128 678889999974442...36**************9456999999*************************7665666..6665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.883 | 36 | 130 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.55E-13 | 50 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.57E-10 | 52 | 130 | No hit | No description |
Pfam | PF02362 | 8.4E-11 | 52 | 129 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-13 | 52 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
IYFYNGSNGK LESNMDIRAE VIENGESWLF VDNETSMMGT KGSFKNRYKP HYFPIMFMTK 60 YLSGSQGIVT FEDCDGFSWR IEWYAYLQSG RRLVFTIGWY KFASDHNAKD GDIFLVEILN 120 SNHFKFQIFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 6e-07 | related to vernalization1 1 |