PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020880-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 330aa    MW: 37285.5 Da    PI: 8.0005
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020880-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-1755102148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd++l++  + +G  +W+t+++  g+ R++k+c++rw +yl
  PSME_00020880-RA  55 KGPWTAEEDKKLINFLATHGQCCWRTVPELAGLSRCGKSCRLRWTNYL 102
                       79********************************************97 PP
2Myb_DNA-binding513.4e-16108152147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg +++ E++l++d++ + G++ W+ Ia++++ gRt++++k++w+++
  PSME_00020880-RA 108 RGVFSESEEKLIIDLHSRVGNR-WSQIASYLP-GRTDNEIKNYWNTH 152
                       899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2246105IPR009057Homeodomain-like
PROSITE profilePS5129416.09250102IPR017930Myb domain
SuperFamilySSF466894.31E-2952149IPR009057Homeodomain-like
SMARTSM007171.1E-1454104IPR001005SANT/Myb domain
PfamPF002496.8E-1655102IPR001005SANT/Myb domain
CDDcd001671.74E-1057102No hitNo description
PROSITE profilePS5129424.989103157IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-26106158IPR009057Homeodomain-like
SMARTSM007172.2E-16107155IPR001005SANT/Myb domain
PfamPF002494.9E-15108152IPR001005SANT/Myb domain
CDDcd001672.16E-11111153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNRSPNFASV SAIKAAGTNL GRKILFSFSF LFFSFWSGVL RMGRKPCCDK VGLKKGPWTA  60
EEDKKLINFL ATHGQCCWRT VPELAGLSRC GKSCRLRWTN YLRPDLKRGV FSESEEKLII  120
DLHSRVGNRW SQIASYLPGR TDNEIKNYWN THIKKKLKRM GLDPATHRPI SETLPQPPPV  180
AQNNEAEGLL KPLKDGKSIQ QKLQAGSVPL KHVKEEESEQ QSYSFDETNA QIPCKMAEEL  240
QVTEMMNAQT PHLLHADYWW EYGDIDAGLA ESSQDNTCSS WINPGSIAGD MFETQGIVVP  300
VPELSNQQLF LQSVDYFAQG ISNKIFPLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28531575108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032717.18e-81PREDICTED: protein ODORANT1
SwissprotQ9C7U77e-79MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A059ADJ02e-79A0A059ADJ0_EUCGR; Uncharacterized protein
STRINGXP_010032717.13e-80(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-81myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]