PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020871-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 668aa    MW: 75828.1 Da    PI: 7.2994
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020871-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09470511240
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       ++W+ eE +ll ++v+++++g   +W+ Ia+++g+gRt +++
  PSME_00020871-RA 470 KPWSREEIDLLRKGVQKYPKGtsqRWEVIANYIGTGRTVEEI 511
                       69************************************9886 PP
2Myb_DNA-binding21.65e-07611655345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       +W++  +  l++a k ++++   +W+++a  ++ g++  qc  ++ 
  PSME_00020871-RA 611 AWSAVQERALIQALKTFPKEtpqRWERVATAVP-GKSKVQCMRKFT 655
                       8********************************.*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.63E-2075175IPR001623DnaJ domain
PRINTSPR006258.5E-98199IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.8E-2093198IPR001623DnaJ domain
SMARTSM002713.7E-1496171IPR001623DnaJ domain
CDDcd062571.25E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.28897179IPR001623DnaJ domain
PfamPF002261.1E-1797176IPR001623DnaJ domain
PRINTSPR006258.5E-9120135IPR001623DnaJ domain
PRINTSPR006258.5E-9151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.605.4E-7466512IPR009057Homeodomain-like
PROSITE profilePS512937.361467522IPR017884SANT domain
SMARTSM007172.6E-8468521IPR001005SANT/Myb domain
PfamPF002493.3E-8470511IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-8470513IPR009057Homeodomain-like
CDDcd001673.02E-6471511No hitNo description
PROSITE profilePS512939.234607662IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.4E-4607657IPR009057Homeodomain-like
SMARTSM007172.7E-9608660IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-9608658IPR009057Homeodomain-like
PfamPF002493.5E-6611655IPR001005SANT/Myb domain
CDDcd001674.25E-6611658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MSILNNCPML TYSAELEDGK PLYVSSNCLP WKATRLEPAG HSFHAAALCL LGYKEDTDDE  60
NDDKSESGEK DKGFTASYDS YRFKGKKKSA DGKEQQDHYA LLGLGHLRYL ATEDQIRKSY  120
REAALKYHPD KQASLLLAEE TDEAKQSKKD EIESHFKTIQ EAYEVLIDSV KRRIYDSTDE  180
FDDEVPSDCA PQDFFKVFGP VFMRNSRWSV TQPVPSLGDE NTPIKEVDKF YDFWDSFKSW  240
REFPHADEFD LEQAESREHK RWMERQNGKL QEKAKKEEYA RIRSFVDNAY KRDLRILRRK  300
EEEKAEKLRK KEAKVQARRM KEEAAARAAE EERLRKEEEE KRAAEVALAH KKSKEKEKKL  360
LRKERSRLRT AAVSVVSKKL LGIVEDDVES LCTSLEIDRL RILCDQMGQK GEHERAQLLR  420
DALAGDADGG KSFEKTIPQN DTVQDETISQ GPQGHAKAES LLNSYEKKEK PWSREEIDLL  480
RKGVQKYPKG TSQRWEVIAN YIGTGRTVEE ILKAIKTVLL QKPDTANSFD SFLERRKAAN  540
PIMSPLTTRD EVGDSPANGC VPGTIAGEKA KGVTEQQASG GSNRSADGKG LSGGSIESGA  600
NGSVVGIDQD AWSAVQERAL IQALKTFPKE TPQRWERVAT AVPGKSKVQC MRKFTEMKEN  660
FRNKKSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1819329620123Zuotin
5dje_B2e-1819329620123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297320RRKEEEKAEKLRKKEAKVQARRMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127250.0BT112725.1 Picea glauca clone GQ03320_B04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D6R2D90.0A0A0D6R2D9_ARACU; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain