PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020824-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29174.3 Da PI: 8.9562 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.5 | 1.9e-47 | 71 | 197 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky+ g+r+nra+ sgy kat dk++ + PSME_00020824-RA 71 PPGFRFFPTDEELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPYGSRPNRAAGSGYQKATCADKPINA 162 9****************************.88***************8777899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy +apkg+kt+W+mheyrl PSME_00020824-RA 163 KgGKKRVGIKKALVFYARKAPKGSKTNWIMHEYRL 197 966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-56 | 63 | 223 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.723 | 70 | 223 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-24 | 71 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
LTSIDLEEWM KFEVVESIQS QLFHGIFSHN GPKSGKTQSP TTNMGTSLGD FHEEQPWILK 60 NMDYHEHNQW PPGFRFFPTD EELVVHYLCK KAASQIIPVP IIAEVDLYKY DPWQLPDKAL 120 FGEKEWYFFT PRDRKYPYGS RPNRAAGSGY QKATCADKPI NAKGGKKRVG IKKALVFYAR 180 KAPKGSKTNW IMHEYRLADV SRPARKKGSL RLDDWVLCRI YNKNISAEKL ALDQKEGPMD 240 APMESIDEKD MEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-78 | 71 | 229 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-78 | 71 | 229 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-78 | 71 | 229 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-78 | 71 | 229 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-78 | 71 | 229 | 18 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-78 | 71 | 229 | 18 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792531.1 | 6e-89 | NAC domain-containing protein 68-like isoform X2 | ||||
Refseq | XP_010922868.2 | 8e-89 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 8e-85 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D6R3P9 | 1e-108 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P02390_001 | 1e-87 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-86 | NAC family protein |