PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020770-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 417aa    MW: 45249.1 Da    PI: 8.0768
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020770-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35251172103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll
  PSME_00020770-RA  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLL 108
                       9*****************************************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k++
  PSME_00020770-RA 109 CEIHRRKTS 117
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.27E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MALMLDSCEG MLLSVESHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE IHRRKTSSQS  120
VPSSGHGMPM SSSISPTTSD DQDWSPLSTP LSSPRGVAAA TGGGGGGGSI MVGCSGGGGA  180
AAMHASAAAA AAAVSALSDD NERLRRNNSM LLSELTHMRK LYNDIIFFVQ HHVRIPPPPP  240
HQGGSSSSAM NMNMNRLKYH QQPTTNPNVV PLLLEAPTVP STPRIADARD HRIMNPCNNR  300
EVVEISSSSP RSQLFGLGTA RASSISFVDT KLKEMAAATS SSPSTSSITV ADQVEGIKSP  360
PKLFGVPLHG KKRLHPQWDV VDQAETNSLQ EQYTHIILAP SKALKTDLAL NLTPSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-22211167112Heat shock factor protein 1
5hdn_A2e-22211167112Heat shock factor protein 1
5hdn_B2e-22211167112Heat shock factor protein 1
5hdn_C2e-22211167112Heat shock factor protein 1
5hdn_D2e-22211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1066940.0BT106694.1 Picea glauca clone GQ03008_E03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112180.11e-117heat stress transcription factor B-4
SwissprotQ9C6359e-88HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW9SA361e-116W9SA36_9ROSA; Heat stress transcription factor B-4
STRINGXP_010112180.11e-117(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-68heat shock transcription factor B4