PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020753-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 360aa    MW: 40701.5 Da    PI: 6.0737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020753-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-52121391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Pt+eelvv+yL+kk+++++l++  +i++vd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk+++
  PSME_00020753-RA  12 LPPGFRFFPTEEELVVHYLCKKAASQSLPV-PIIADVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIT 103
                       79****************************.88***************8888899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +k ++++vg+kk Lvfy g+apkg+kt+W+mheyrl
  PSME_00020753-RA 104 AKgGKKKVGVKKALVFYVGKAPKGSKTNWLMHEYRL 139
                       *977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6310165IPR003441NAC domain
PROSITE profilePS5100560.41312165IPR003441NAC domain
PfamPF023653.1E-2613139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGKRNAEADL HLPPGFRFFP TEEELVVHYL CKKAASQSLP VPIIADVDLY KYDPWQLPEK  60
ALFGEKEWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PITAKGGKKK VGVKKALVFY  120
VGKAPKGSKT NWLMHEYRLA DFNRPARKKG SLRLDDWVLC RIYNRKLSAE KLALAQNESF  180
NDEPIEAIDE KEMENQLTSP SIEQSGIEQS NPSFDHLSNL GSSPACYNLG SSPMNSNICF  240
QNLDFFQNAR TPFNGSTLEA PVQNTEFNTI SSTINPQWTN CNSTDLISGF HPASSSSKPS  300
SFSEPISEKE EVQSSFRLEN FSQDQQQSLF NLGLENLQNP FPQLDQMTFA DAFQDWFYPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-8431716174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0512220.0AF051222.1 Picea mariana ATAF1-like protein (Sb29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.11e-101NAC domain-containing protein 68-like isoform X2
TrEMBLA0A0D6R3P91e-155A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGXP_008782755.16e-99(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-86NAC family protein