PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020635-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29459.1 Da PI: 10.0851 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.7 | 1.5e-29 | 49 | 125 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfF+++d+ky++g+r+n+a+ s yWka g dk++ +k +++ vg+kk Lvfy g+apkg+kt+W+mhey+l PSME_00020635-RA 49 FGEKEWYFFTPHDRKYPNGSRPNKAAGSRYWKAIGADKPINAKgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYHL 125 4789**************************************966777****************************8 PP | |||||||
2 | NAM | 84.9 | 1.6e-26 | 182 | 261 | 2 | 82 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 ppGfrF+Ptdeelvv+yL+kk + + +++ +i+evd+yk++Pw+L k+ +ekewyfF++rd+ky++g+r++ra+ sgy PSME_00020635-RA 182 PPGFRFSPTDEELVVHYLCKKEALQIIHV-PIIAEVDLYKYDPWQLLDKALFGEKEWYFFTPRDRKYPNGSRPKRAAGSGY 261 9**********************999999.88**************86667799**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.399 | 1 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-13 | 42 | 125 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-30 | 44 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.11E-31 | 175 | 261 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.281 | 181 | 261 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-11 | 182 | 261 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGDLSSSILR EDSNMLAPSY ACKLPGFVSI RNEADGLLHM LPAVDKTLFG EKEWYFFTPH 60 DRKYPNGSRP NKAAGSRYWK AIGADKPINA KGGKKRVGIK KALVFYAGKA PKGSKTNWIM 120 HEYHLADVSR PARKKGSLRI PSSLCVMGGI KGLGTIRVAI HLEELCKQAR DHCALLVHNQ 180 WPPGFRFSPT DEELVVHYLC KKEALQIIHV PIIAEVDLYK YDPWQLLDKA LFGEKEWYFF 240 TPRDRKYPNG SRPKRAAGSG Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-39 | 45 | 261 | 12 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-39 | 45 | 261 | 12 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-39 | 45 | 261 | 12 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-39 | 45 | 261 | 12 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
3swm_B | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
3swm_C | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
3swm_D | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
3swp_A | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
3swp_B | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
3swp_C | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
3swp_D | 2e-39 | 45 | 261 | 15 | 157 | NAC domain-containing protein 19 |
4dul_A | 2e-39 | 45 | 261 | 12 | 154 | NAC domain-containing protein 19 |
4dul_B | 2e-39 | 45 | 261 | 12 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434240.1 | 3e-44 | NAC domain-containing protein 2 | ||||
Swissprot | Q9CAR0 | 2e-43 | NAC32_ARATH; NAC transcription factor 32 | ||||
TrEMBL | A0A0D6R3P9 | 1e-50 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_006434240.1 | 1e-43 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-45 | NAC domain containing protein 32 |