PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020524-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Dof
Protein Properties Length: 355aa    MW: 38755.3 Da    PI: 7.1749
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020524-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.5e-393393262
            zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      +e+a+kcprC+stntkfCyynnyslsqPr+fCk+CrryWtkGG+lrnvPvGgg+rknk+++
  PSME_00020524-RA 33 AEQAQKCPRCESTNTKFCYYNNYSLSQPRFFCKTCRRYWTKGGTLRNVPVGGGCRKNKRTK 93
                      57899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-273191IPR003851Zinc finger, Dof-type
PfamPF027013.8E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7143791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVYNAMQERG LKPPDEIMSC SRPLLDRRLK PHAEQAQKCP RCESTNTKFC YYNNYSLSQP  60
RFFCKTCRRY WTKGGTLRNV PVGGGCRKNK RTKRASDQPV SAQNDASPST NTTGCEGPSC  120
PTMEEPSSTV PGASTSIYYS IANEGDELAG FPYARAPLGG CNSNNNTGSL QPSLAPLGSL  180
SSLNALQSLK SSFPGLDLPS CSRPDQGPLS ISDLSCLFEA QHQQHMNTSS SLPISHVSDV  240
FNPFNLPVDA LNSHDHQWRG LVQQQKLGVP LEDGHVNMLP LGENIMEGLR PHQQKLRQNI  300
NAKLEEENIR TSAPPVHWQV PPEGLFENGG DPGYWNGGGT WPDLSGYGPS SSPLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1161071e-133BT116107.1 Picea glauca clone GQ03711_P05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QVB31e-164A0A0D6QVB3_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.16e-34TARGET OF MONOPTEROS 6