PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020379-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Nin-like

Protein Properties

Length: 718aa MW: 79989.2 Da PI: 7.0883

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020379-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8.1e-29	569	619	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ PSME_00020379-RA 569 EKTISLEILQQYFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 619 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.245	558	639	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-25	571	619	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MKASLDQKKT KRMDWEAWME ETGLFSLGPL QSVVAPPRSP APSAYMSDGD GDLSLRKKMM 60 QALRYIKDSE STGQNVLVQV WVPVRQGAKN MLTTYGQPFV LAFPNCGLFQ YRTVSSTFLF 120 SAGEEGEDEV EVSDGIGHSH ALLGLPGRVF QRKLPEWTPN VQYYSMSEYP RVTHAQHYNV 180 RGTVALPVFE PRGQSCVGVV ELIMTAQKIN YAPEVDKVCR ALQICNEGRQ AALAEILAVL 240 TAVCEAHKLP LAQTWVPCKH RNVITTGVGK KKNCVSFDGS CMGQVCMSTI NSAFYVIDAD 300 MWGFRDACTE HHLQKGQGLP GRAFASNQPC FSNDISSFSK MEYPLVHYTR LFSLAAAVAI 360 RVRSTHTGND DYILEFFLNT ECKDSQKLQM QLKTLSVTMN HVCQSLRMLT NKELEEEKVL 420 EVSKEFESFD SQNEFPEYVQ WKTCNNISRI SPELQISPAA EFVQWQERKE TVRQESFQQA 480 LQVGSEGDQN EIQMGQQVVA SLPFVSYQKQ QPEPEGSTLS DLKHHRHELA QVNNEIPAVL 540 ANDDILCSGS FQEHTNIIKG LEKKRGKIEK TISLEILQQY FAGSLKDAAK NIGVCPTTLK 600 RICRQHGISR WPSRKINKVN RSLKKLQGVI ESVKGVEGAF KIETLKTGLV SSAMVPNKVV 660 SNNSSVQGKS SLAVVEGAAN HVHDMVPPPT NEEVTGMKTT LPGEDCIMPE DFSSSQCQ

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MKASLDQKKT KRMDWEAWME ETGLFSLGPL QSVVAPPRSP APSAYMSDGD GDLSLRKKMM  60
QALRYIKDSE STGQNVLVQV WVPVRQGAKN MLTTYGQPFV LAFPNCGLFQ YRTVSSTFLF  120
SAGEEGEDEV EVSDGIGHSH ALLGLPGRVF QRKLPEWTPN VQYYSMSEYP RVTHAQHYNV  180
RGTVALPVFE PRGQSCVGVV ELIMTAQKIN YAPEVDKVCR ALQICNEGRQ AALAEILAVL  240
TAVCEAHKLP LAQTWVPCKH RNVITTGVGK KKNCVSFDGS CMGQVCMSTI NSAFYVIDAD  300
MWGFRDACTE HHLQKGQGLP GRAFASNQPC FSNDISSFSK MEYPLVHYTR LFSLAAAVAI  360
RVRSTHTGND DYILEFFLNT ECKDSQKLQM QLKTLSVTMN HVCQSLRMLT NKELEEEKVL  420
EVSKEFESFD SQNEFPEYVQ WKTCNNISRI SPELQISPAA EFVQWQERKE TVRQESFQQA  480
LQVGSEGDQN EIQMGQQVVA SLPFVSYQKQ QPEPEGSTLS DLKHHRHELA QVNNEIPAVL  540
ANDDILCSGS FQEHTNIIKG LEKKRGKIEK TISLEILQQY FAGSLKDAAK NIGVCPTTLK  600
RICRQHGISR WPSRKINKVN RSLKKLQGVI ESVKGVEGAF KIETLKTGLV SSAMVPNKVV  660
SNNSSVQGKS SLAVVEGAAN HVHDMVPPPT NEEVTGMKTT LPGEDCIMPE DFSSSQCQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT122259	0.0	BT122259.1 Picea sitchensis clone WS0442_G03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006844913.1	0.0	protein NLP6
Refseq	XP_020523225.1	0.0	protein NLP6
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	D5A7X9	0.0	D5A7X9_PICSI; Uncharacterized protein
STRING	ERN06588	0.0	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-143	NIN like protein 7