PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020323-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19950.7 Da PI: 5.9217 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.9e-41 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck++r+kC+++Cvlapyfp+++pkkf vh++FG+ +v+kll++lp e+r+da++s+vyeA+ r +dPv+G+vgvi++lq+++++l+ + PSME_00020323-RA 17 PCAGCKIQRKKCSEKCVLAPYFPQDNPKKFLLVHRVFGNGHVVKLLQDLPAEQRSDAVNSMVYEANQRFHDPVHGCVGVIKDLQKKVAELELQ 109 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e PSME_00020323-RA 110 LASTQAE 116 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.52 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-39 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MQNMISENAW RTETVSPCAG CKIQRKKCSE KCVLAPYFPQ DNPKKFLLVH RVFGNGHVVK 60 LLQDLPAEQR SDAVNSMVYE ANQRFHDPVH GCVGVIKDLQ KKVAELELQL ASTQAELTNI 120 SMQHANLFTL VTGYQEASDP NFYCLSPQES DVTDVKPLVF DDQDHPLQFW ESLWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 16 | 117 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 16 | 117 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057811.1 | 1e-50 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-47 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 5e-47 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | B8LQI9 | 3e-74 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | Solyc11g072470.1.1 | 8e-50 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-50 | LOB domain-containing protein 1 |