PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020272-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 1353aa MW: 153084 Da PI: 8.0155

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020272-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.2	5.1e-17	42	96	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++q+e Le+++++++yp+++++ +LA +l Lte+qV WF+ rR+kekk PSME_00020272-RA 42 KRRLKTRYQVEGLERFYAEEKYPTEAMKGKLAVELMLTEQQVHKWFCHRRQKEKK 96 79999*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-14	35	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	37	97	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-17	38	96	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-17	39	101	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-14	42	96	IPR001356	Homeobox domain
CDD	cd00086	5.70E-14	42	98	No hit	No description
SMART	SM00571	7.2E-11	549	608	IPR018501	DDT domain
PROSITE profile	PS50827	14.011	549	608	IPR018501	DDT domain
Pfam	PF02791	4.5E-10	550	605	IPR018501	DDT domain
Pfam	PF05066	9.4E-8	700	768	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.9E-6	872	906	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-11	990	1061	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1353 aa Download sequence Send to blast
FDITLQLYST QDFSARCSVA GDTNISIMGS VKDNIYLENN GKRRLKTRYQ VEGLERFYAE 60 EKYPTEAMKG KLAVELMLTE QQVHKWFCHR RQKEKKSKIN DTNSGGKQFR GVGLRKDGSR 120 KVKRLSISCL KRVENQMPLN IRNSRNPRSA ALGLELNDED VNPGNYNAID NIFVGINSSQ 180 ERSTLQNGSP CKMQSTRLRL QNGNRFKMQP NRSLRQRKNT GKIESKKRKR KSELATGQTY 240 VQEDAYDVAV TAVKSRLSGR FREDGPPLSI EYDPLPPGAF DSPLEPCCED ITASQDVQLM 300 PSKKKLGRSS HLPELHLIQP DIDSANKVPT SAFVTTGLQS GHNKFTAGRS GGKVLLPPRY 360 APLHAEIGNM DKEVHVTGDD VDPFPSVNTF KGNTDTYSGM PDEWQSNLLS VQGEDEVQPK 420 YMTMREKNQE KDLQKKRGYV LKLKWNVFQE EKRPQSQREV CKSLKQRDGA KITAARKRNL 480 KKQSRKPEKL IEDECLEMRE LQITSNVGVE MDETGRLNSK YHEGLPGRFP PASLRMKQLC 540 LAHPWKDSKE NVRNLFMVFR FLYTLSDVIN LCPFTLDEFL QAFHVHESKL LGQIHIALLK 600 LLLEDVEIEL QSSVSTGKLT QCDSALSDCS FLRLTQAVKR RSFNVKVWKE FLNPLTWPEI 660 LRQVVMDAGF CPKRKKEMEI LSKTADKEGS QTGYHGLVPG TLKCALFRIL SKEGTNGLKI 720 SEIAKHVQNC DLNDLPSSNA LEALICSSLS SDITLFERIS SSAFRLRANF IHSRDGDHSC 780 SETSGDMESD TVESDSEESD TGESAESAYE EQVIAHAPET GREGIYTGIP PALPPPRECR 840 SQHDAIVGLR NEGNEVDRHC IDGTEIDESH VGDAWVLGLM EGEYADLSVE EKLNALVALF 900 NLVNSGNIVQ RTIKDPSRMA SQFHSQVELH RIGNKQGRDK STAAKKPSSV NTSRKTSKKR 960 KRDRVYLKLS DLDSKSQASD PYCPESFSTQ SICLGSDRRH NTYWQFFGGS LRDPGCGRVY 1020 FESSDDGHWE VIDNEEALDT LMALLDSRGV REVNLLSSLR SRGTLLRQEM RKPKSGVNQE 1080 SGKYGREILS GDSSSGASII ENNQNDTVFE PENDSSVLSG AISLQFGGTE VENQHDWDHY 1140 RAFDRWVWGD FFQTLKVLKC NADRLLPCES CHDLYWPEEE HCMLCHTTFE LDFDSEERYA 1200 VHVAKCKGRG HDESIRRCKV LSSRLQSLKA GMQAVEAVLP QEALEASWKK SGQKVWIKHL 1260 RRASSPTELA EVLTDLQNAI RDDWLLRSQS ACREMLPFFP FTPQTTASMS FWLIRLDALI 1320 SVNWEKTSPK DARQRRIRSK GVFMPFVHKM LLP

Sequence ? help Back to Top

Protein Sequence Length: 1353 aa Download sequence Send to blast

FDITLQLYST QDFSARCSVA GDTNISIMGS VKDNIYLENN GKRRLKTRYQ VEGLERFYAE  60
EKYPTEAMKG KLAVELMLTE QQVHKWFCHR RQKEKKSKIN DTNSGGKQFR GVGLRKDGSR  120
KVKRLSISCL KRVENQMPLN IRNSRNPRSA ALGLELNDED VNPGNYNAID NIFVGINSSQ  180
ERSTLQNGSP CKMQSTRLRL QNGNRFKMQP NRSLRQRKNT GKIESKKRKR KSELATGQTY  240
VQEDAYDVAV TAVKSRLSGR FREDGPPLSI EYDPLPPGAF DSPLEPCCED ITASQDVQLM  300
PSKKKLGRSS HLPELHLIQP DIDSANKVPT SAFVTTGLQS GHNKFTAGRS GGKVLLPPRY  360
APLHAEIGNM DKEVHVTGDD VDPFPSVNTF KGNTDTYSGM PDEWQSNLLS VQGEDEVQPK  420
YMTMREKNQE KDLQKKRGYV LKLKWNVFQE EKRPQSQREV CKSLKQRDGA KITAARKRNL  480
KKQSRKPEKL IEDECLEMRE LQITSNVGVE MDETGRLNSK YHEGLPGRFP PASLRMKQLC  540
LAHPWKDSKE NVRNLFMVFR FLYTLSDVIN LCPFTLDEFL QAFHVHESKL LGQIHIALLK  600
LLLEDVEIEL QSSVSTGKLT QCDSALSDCS FLRLTQAVKR RSFNVKVWKE FLNPLTWPEI  660
LRQVVMDAGF CPKRKKEMEI LSKTADKEGS QTGYHGLVPG TLKCALFRIL SKEGTNGLKI  720
SEIAKHVQNC DLNDLPSSNA LEALICSSLS SDITLFERIS SSAFRLRANF IHSRDGDHSC  780
SETSGDMESD TVESDSEESD TGESAESAYE EQVIAHAPET GREGIYTGIP PALPPPRECR  840
SQHDAIVGLR NEGNEVDRHC IDGTEIDESH VGDAWVLGLM EGEYADLSVE EKLNALVALF  900
NLVNSGNIVQ RTIKDPSRMA SQFHSQVELH RIGNKQGRDK STAAKKPSSV NTSRKTSKKR  960
KRDRVYLKLS DLDSKSQASD PYCPESFSTQ SICLGSDRRH NTYWQFFGGS LRDPGCGRVY  1020
FESSDDGHWE VIDNEEALDT LMALLDSRGV REVNLLSSLR SRGTLLRQEM RKPKSGVNQE  1080
SGKYGREILS GDSSSGASII ENNQNDTVFE PENDSSVLSG AISLQFGGTE VENQHDWDHY  1140
RAFDRWVWGD FFQTLKVLKC NADRLLPCES CHDLYWPEEE HCMLCHTTFE LDFDSEERYA  1200
VHVAKCKGRG HDESIRRCKV LSSRLQSLKA GMQAVEAVLP QEALEASWKK SGQKVWIKHL  1260
RRASSPTELA EVLTDLQNAI RDDWLLRSQS ACREMLPFFP FTPQTTASMS FWLIRLDALI  1320
SVNWEKTSPK DARQRRIRSK GVFMPFVHKM LLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	230	KKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	6e-85	Homeodomain-like transcriptional regulator