PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020220-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 352aa    MW: 38985.1 Da    PI: 6.5235
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020220-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.7e-13283583
                      -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3  5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83
                      l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+ + +
  PSME_00020220-RA  2 LSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTGIHQ 83
                      5789********************555566778***************9989999999***9.***************97666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.2061102IPR003340B3 DNA binding domain
SMARTSM010192.9E-71102IPR003340B3 DNA binding domain
SuperFamilySSF1019368.37E-13279IPR015300DNA-binding pseudobarrel domain
CDDcd100179.94E-162113No hitNo description
PfamPF023622.5E-10281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-232117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5105011.217280332IPR011124Zinc finger, CW-type
PfamPF074961.2E-6285320IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLKIQDA KGKEWIFQFR FWPNNNSRMY  60
VLEGVTPCIQ SMQLQAGDTG IHQLLVKLSS KTVLRVTFSR LDPEGKLVMG FRKASNSASP  120
QEGQPSTTGN GTSPGGGLTN SSIENLSSLE PFSVLPLRSI NGNGEASMNA FGGQVSAPDV  180
GFSWYKPDTA LNKIKESSTF QPLLLSDKKR SYTLGSKSKR LRIDNEDSLE LKLTWEEAQD  240
LLRPPPRAVP TIVMIEGHEF EEYEEAPVFG KHTIFTTNQS GEKHQWAQCD ECSCWRRLPV  300
EAFLPPRWTC ADNTWDPRRT YLVCGRLVDE SVGRSDSVEA KIASSVEESK LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-55212128131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1045344e-33BT104534.1 Picea glauca clone GQ02811_J05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022761398.11e-130B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ0D5G41e-112Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A200R3J01e-129A0A200R3J0_9MAGN; B3 DNA binding domain
TrEMBLA0A445ALC21e-131A0A445ALC2_ARAHY; Uncharacterized protein
STRINGEOY044561e-130(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-110HSI2-like 1