PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019917-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 391aa    MW: 44301.7 Da    PI: 9.3791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019917-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rgrW+  Ed +l ++v  +G g W++I+++  ++R++k+c++rw +yl
  PSME_00019917-RA 14 RGRWSVKEDMILSEYVLIHGDGEWSKIPQKAALKRCGKSCRLRWTNYL 61
                      89******************************9*************97 PP
2Myb_DNA-binding46.77.5e-1567111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ + +E+el+ +++++lG++ W++Ia +++ gRt++++k++w++ 
  PSME_00019917-RA  67 RGSISLDEEELIFRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 111
                       677899****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.544961IPR017930Myb domain
SuperFamilySSF466897.03E-2712108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-121461IPR001005SANT/Myb domain
CDDcd001674.04E-81661No hitNo description
PROSITE profilePS5129424.26162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2365116IPR009057Homeodomain-like
SMARTSM007173.6E-1466114IPR001005SANT/Myb domain
PfamPF002493.6E-1367111IPR001005SANT/Myb domain
CDDcd001674.09E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MCRSPCCSKK GLNRGRWSVK EDMILSEYVL IHGDGEWSKI PQKAALKRCG KSCRLRWTNY  60
LRPGIKRGSI SLDEEELIFR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT CLSKKLLLDE  120
SQRKRMSRSP SPIRNHVLIK TTPRRIITAV KRAGILNAND YSNRLSSDKA LKLCTIEQNA  180
KSSNLGCNVL VNDSERSAFA MTDVTDQVRN SATCYMSSFV DQQCPHVDNS AAHGATLAGN  240
LFDLQEALSP HCNLLSSPSF FWTESGLEQF GMRRATSVGA ETIAFEDTCP DQSNPKNVNR  300
FTFADDRRME EFYGGIRENL QPKVEVHLGV HSIGRAIIVQ RIGVFQQKHE ATQCLAKESI  360
LVECLHKVID PLEDRQQLGL LARIAQQRRT W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-102B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-54MYB family protein