PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019912-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 360aa    MW: 40728.1 Da    PI: 6.4227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019912-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-152370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT +Ed  l+++v   G g+W+t+a+  g++Rt+k+c++rw++yl
  PSME_00019912-RA 23 RGPWTVDEDRSLIRCVSTRGEGRWNTVAKWAGLKRTGKSCRLRWLNYL 70
                      89********************************************97 PP
2Myb_DNA-binding52.61.1e-1676119146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eE++l++++++++G++ W++Iar ++ gRt++++k++w++
  PSME_00019912-RA  76 RGNITPEEQLLILELHRLWGNR-WSKIARQLP-GRTDNEIKNYWRT 119
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1441870IPR017930Myb domain
SuperFamilySSF466892.13E-2920117IPR009057Homeodomain-like
SMARTSM007172.8E-112272IPR001005SANT/Myb domain
PfamPF002495.6E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-212477IPR009057Homeodomain-like
CDDcd001671.63E-82570No hitNo description
PROSITE profilePS5129425.60871125IPR017930Myb domain
SMARTSM007174.4E-1675123IPR001005SANT/Myb domain
PfamPF002495.4E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2378125IPR009057Homeodomain-like
CDDcd001672.30E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTKATSCAAA AIEDDLEEQS VRRGPWTVDE DRSLIRCVST RGEGRWNTVA KWAGLKRTGK  60
SCRLRWLNYL RPDVKRGNIT PEEQLLILEL HRLWGNRWSK IARQLPGRTD NEIKNYWRTR  120
IKKHIQKAHC DANPKQLEDS LRYSWLSALL QQRSIENSNQ SAQAASSSET IRPTELDCMV  180
SQYKWMSGLE TENAGINESG YSLNPASFRS SQGSLCSRDY LNQNSRTTFH DGHDIDQSTS  240
EKQNCYYQQS VYGYSNANSV HHEISQAISP SEVGIDKDVS ASFNGIALVH PIMISESEEV  300
KDLHGLAPGL GIQYVNSEAQ ASSCNNQISG FEVSWPQESN NSSLWNNMEE LWYMPSATQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25231257108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-61myb domain protein 112