PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00019878-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YC

Protein Properties

Length: 334aa MW: 37773.9 Da PI: 5.0468

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00019878-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	146.8	4.7e-46	131	219	14	102
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 t+fk+h+lPlarikki+k+dedvkmisaeaP+l+skacelfileltl swlh+eenkrrtl+++di a++r d+ dfl+divprde+k PSME_00019878-RA 131 TEFKQHQLPLARIKKIMKYDEDVKMISAEAPILFSKACELFILELTLHSWLHTEENKRRTLQRNDIVGAISRGDVLDFLLDIVPRDEVK 219 79************************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.02E-27	131	209	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-33	132	200	IPR009072	Histone-fold
Pfam	PF00808	7.7E-19	137	199	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MKSSTWRCAP FGEGSRLNFL DGFRERGFRL LCLKGPRFLF CCFSPLGGSE VQAAVVPPAP 60 GGYDEGLGHQ RPLRHSALGS IVRNIGFNNF SVSSVVEEED STFVEKLEEE DESRDLGFSF 120 VQCGYIILFL TEFKQHQLPL ARIKKIMKYD EDVKMISAEA PILFSKACEL FILELTLHSW 180 LHTEENKRRT LQRNDIVGAI SRGDVLDFLL DIVPRDEVKE VDNGCTDYLP DTPYGFVEEP 240 RIPEKDSPPD DEYGGHWRWI PLAESMSYGG IHFPVMHAQP YHHNLNHGIV DGDPAERFYT 300 GAAYYPAGKK GFILEQLTAL LEKGLIRDQL TSLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-43	131	215	11	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	193	RRTLQRN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085083	1e-114	EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-47	nuclear factor Y, subunit C2