PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00019795-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 560aa MW: 62959.1 Da PI: 4.8938

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00019795-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.7e-10	388	430	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N+++ Lr+++P+ +K++ +iL+ ++eY k+L PSME_00019795-RA 388 LAERRRRKRLNERLCMLRSVVPTI-----TKMDRTSILRDTIEYTKQL 430 58*******************7.....6************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.237	381	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-15	383	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-11	387	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-8	388	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-13	388	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MSTSIYDQVF MNRTMAECTW DTSHNSHFDI SESRVLGEAN GLRMLMDSNF TNPGNSGLNG 60 TEIARCPDTE LVHEVVRSKY VNDICGGCNH NQSDQPYSCA WSAVHSQDFN ENYIWCSDYK 120 FSNCFKPENR EDRGIFSHNY GAEFDQNVFT VHTSSNRENS NGFFKDEPFY QANNICENFS 180 EKGLQNEFGL ICSNVGGVSN VGSDFSNFTV RCVHENSMNS TIGRACDGIS FQQYDETEMN 240 RRLLGYNTEN VISKLLNAEM TSIEPLEFEG TKGIATVSVN ELDGFDDQMP LSASNKTEFY 300 SDEQCTQKVC LPIKDSENKV PMNSAGTQLA ANNDGNPEEN GSRSERVMVK NDNLTMVTLT 360 AAETEFSNVK ALACGESKGK GQPAKNLLAE RRRRKRLNER LCMLRSVVPT ITKMDRTSIL 420 RDTIEYTKQL LHQIRSLHGE LEPQIEWPAH LRAYEGYFRP ASIDLDRKFV DKKVPKLDVE 480 KSGSQDLNIH MTCETNPTML LSTIGTVESF GFDIQQGIIS CFGDFGMQAH CSEIVKDKSN 540 IKPEDVRLAL LQTGGYFGRN

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MSTSIYDQVF MNRTMAECTW DTSHNSHFDI SESRVLGEAN GLRMLMDSNF TNPGNSGLNG  60
TEIARCPDTE LVHEVVRSKY VNDICGGCNH NQSDQPYSCA WSAVHSQDFN ENYIWCSDYK  120
FSNCFKPENR EDRGIFSHNY GAEFDQNVFT VHTSSNRENS NGFFKDEPFY QANNICENFS  180
EKGLQNEFGL ICSNVGGVSN VGSDFSNFTV RCVHENSMNS TIGRACDGIS FQQYDETEMN  240
RRLLGYNTEN VISKLLNAEM TSIEPLEFEG TKGIATVSVN ELDGFDDQMP LSASNKTEFY  300
SDEQCTQKVC LPIKDSENKV PMNSAGTQLA ANNDGNPEEN GSRSERVMVK NDNLTMVTLT  360
AAETEFSNVK ALACGESKGK GQPAKNLLAE RRRRKRLNER LCMLRSVVPT ITKMDRTSIL  420
RDTIEYTKQL LHQIRSLHGE LEPQIEWPAH LRAYEGYFRP ASIDLDRKFV DKKVPKLDVE  480
KSGSQDLNIH MTCETNPTML LSTIGTVESF GFDIQQGIIS CFGDFGMQAH CSEIVKDKSN  540
IKPEDVRLAL LQTGGYFGRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	396	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-28	beta HLH protein 93