PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019789-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 407aa    MW: 46365.6 Da    PI: 6.2929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019789-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-51351641128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGf+FhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++Pw+Lp k + +e+ wyfFs+rdkky+++ r+nra++sgyWkatg+dk++l
  PSME_00019789-RA  35 LPPGFQFHPTDEELVVHYLKKKASSTPLPV-TIIAEIDLYKFDPWELPGKETFGEQGWYFFSPRDKKYPNEARPNRAATSGYWKATGTDKPIL 126
                       79****************************.89***************76667999************************************* PP

               NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++   ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  PSME_00019789-RA 127 TStsgRTQKVGVKKALVFYGGRLPKGIKTNWIMHEYRL 164
                       998888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-5929174IPR003441NAC domain
PROSITE profilePS5100557.38835214IPR003441NAC domain
PfamPF023652.9E-2736164IPR003441NAC domain
SuperFamilySSF1019417.19E-59202214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNILSEFGQF DFFCSNCELM ESPASFSGSH QQPQLPPGFQ FHPTDEELVV HYLKKKASST  60
PLPVTIIAEI DLYKFDPWEL PGKETFGEQG WYFFSPRDKK YPNEARPNRA ATSGYWKATG  120
TDKPILTSTS GRTQKVGVKK ALVFYGGRLP KGIKTNWIMH EYRLADSGAR PSSFPNKKGS  180
LRESIHFNYN WYIDFDDTAI LQLDDWVLCR IYKKNGHSQR VQGAEQDESL SADEVMTSLP  240
NIEQQNKLQL PKLGPFSGLL ETDDPFIEGL LNDEAMDGNG NISRLPHQVH SSDLSHNNFS  300
NRNDNNSDCQ FEVVPKQEAL AVDNKNKFNS LKRTLSFAAF GDEEIHSAKR FNNMQNNYSY  360
NVNNNVSALL NSMQPNQTFQ QQNFLSALSD SQQNFRLPYI QNMHWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-663222017174NAC domain-containing protein 19
3swm_B3e-663222017174NAC domain-containing protein 19
3swm_C3e-663222017174NAC domain-containing protein 19
3swm_D3e-663222017174NAC domain-containing protein 19
3swp_A3e-663222017174NAC domain-containing protein 19
3swp_B3e-663222017174NAC domain-containing protein 19
3swp_C3e-663222017174NAC domain-containing protein 19
3swp_D3e-663222017174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111671e-161BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841705.11e-110NAC transcription factor 56
SwissprotA2YMR03e-87NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLW1P8R51e-108W1P8R5_AMBTC; Uncharacterized protein
STRINGERN033801e-109(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.18e-86NAC domain containing protein 25