PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019535-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 1439aa    MW: 162846 Da    PI: 5.4765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019535-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-16877166
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66
                      f+k+ tpsdv++++rlv+ k++ae+     ++++ ++ tl++ de++++We+ ++++k+s++yvlt+GW+
  PSME_00019535-RA  8 FDKEATPSDVGNLNRLVVLKQHAEHKfspeSQINDRDETLVFVDENNKEWEFMYSFWKSSQSYVLTRGWS 77
                      8999*******************666999844455888*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-19377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-13577IPR015300DNA-binding pseudobarrel domain
CDDcd100176.22E-12677No hitNo description
PfamPF023623.0E-13877IPR003340B3 DNA binding domain
PROSITE profilePS5137511.268196230IPR002885Pentatricopeptide repeat
PfamPF130414.1E-12196244IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.7E-6198230IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.6231265IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.6E-6233266IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.669266300IPR002885Pentatricopeptide repeat
PfamPF130411.3E-15266313IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.1E-10268302IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.068301335IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.7E-5303337IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.7E-7316442IPR011990Tetratricopeptide-like helical domain
PfamPF130415.3E-13335384IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.786336370IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.7E-4338371IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.159371405IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0013374405IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.479406440IPR002885Pentatricopeptide repeat
PfamPF130412.1E-8406454IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.2E-6408441IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.75503536IPR002885Pentatricopeptide repeat
PfamPF130414.0E-11536585IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.715537571IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.7E-6540566IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.484572606IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.1E-4575600IPR002885Pentatricopeptide repeat
PfamPF015350.82603627IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.229632666IPR002885Pentatricopeptide repeat
PfamPF015350.029635661IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-5635667IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.999667701IPR002885Pentatricopeptide repeat
PfamPF015350.41670699IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.731702736IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.6E-6704737IPR002885Pentatricopeptide repeat
PfamPF015354.4E-4709733IPR002885Pentatricopeptide repeat
PfamPF130417.7E-17736785IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.704737771IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-7739773IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.277772806IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.7E-7773834IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007561.5E-7775808IPR002885Pentatricopeptide repeat
PfamPF130411.2E-13806855IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.244807841IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.9E-8810842IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.745842876IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.4E-6845875IPR002885Pentatricopeptide repeat
PfamPF128543.4E-8872903IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.4E-4876908IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.983877911IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-5879911IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.32210121046IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-510231047IPR002885Pentatricopeptide repeat
PfamPF130411.9E-810231058IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.73110741108IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.8E-710761108IPR002885Pentatricopeptide repeat
PfamPF130411.6E-1210761122IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.611091143IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.3E-611111143IPR002885Pentatricopeptide repeat
PfamPF128546.4E-811401172IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.51511441178IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.6E-1011461180IPR002885Pentatricopeptide repeat
PfamPF130411.0E-1511781227IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.00311791213IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.5E-611811215IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.93112141248IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001712161249IPR002885Pentatricopeptide repeat
PfamPF130411.2E-912481296IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.11712491283IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-412531285IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.38912841318IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-512861319IPR002885Pentatricopeptide repeat
PfamPF130411.1E-713181366IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.23813191353IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.00313221354IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.93613891422IPR002885Pentatricopeptide repeat
PfamPF130411.3E-913891436IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.34414231439IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1439 aa     Download sequence    Send to blast
MVNPEHLFDK EATPSDVGNL NRLVVLKQHA EHKFSPESQI NDRDETLVFV DENNKEWEFM  60
YSFWKSSQSY VLTRGWSINC MLEMLFPSRG GANGKLYINV WLLDMGNERF ICESVYGLPD  120
LSKISEIYYG FRSEQPPTSA MFHRKLQQEI LYQLSPPEDQ TICFYAIFSN YTKVVLMWGK  180
CIRADSFCFT YYIDSDEVTY GMMVDGYFQK GKIDKLFSLL EEMETKGVLV TLITYNALIN  240
GLCKGGKMIE ASTLLKEISV SGLAADNVTY STLMDGYCKG GTVLRALDVY KEMEARGIEP  300
DVITCNVLIK ALCMAGHFRE ATHVFKWMPL RGLDPNVVTF YILIGEYCKA DKIEEALAFS  360
EKLQRRGVMP NISSYNSVIN AFCKKGRISV ASNLLKYSLD KGLIPYVITY RALIKAHSKA  420
GNKQEASELL DNMIGCGIVP DDSLYNTVID RLCNQWKFDT ERKGMLPSIS SYMSLIRVLL  480
KNFRKEEFNE IMNNTYVKEL ASDVRTCNML IDCLCMEHAD FVMNLYDRME VKGVAPNAST  540
YNAVIGGLCK VGKVDMALKM HLRMQKIGFL PVIESFSTLM NGLCKKGSLE EANNIFKLIL  600
RFTMIISNCE RGFIKGALKL HYEMQDNWLL PALETYHSLI YRLCKERDTN GALTIYNEMD  660
AKSMFPTVSS CSVVLDLLCR EGRVKESCKI LKAALKKGIV ADEVVCGKVI YCLCREGCLE  720
EALELCKEME LKGAMPNEVT YNSIIDVICI EGRLVEAFRL FDAMERTGVS PTVTTYSKLI  780
RGLCKEGYLE DAEEILKKLL AMGLVPNINI YNLLISGYCK KGKIEEASTL LFEMEKWSIL  840
PDGFMFESLI KGHCKICNME VALTLFHEME TRGIATNLFC YTNLINGLCS KGRMEEASKL  900
VEELLERDLV LGINTDSRLY SEYFRRLNSM GTDNLFVGPE LDISFVDFIK RLYHEGKIQE  960
ATTILRELEL KNPASGISSC TVQLDRSVND DDIDSTSMLT ANADEEIWKE VLATHDMESI  1020
IKLCKEGRMQ DALMFYDEMI KTGLVPNFKT FSVLIRSLDT NDKLQEANRV MKEMLVTYGI  1080
MVDGYFRKGK LDKVFSLLEE METKGVLVTL ITYNALINGL CKGGKMIEAS TLLKEISVSG  1140
LAANNVTYST LMDGYCKGGT VLRALDVYKE MEARGIEPNV ITCNMLIKAL CMAGHFREAT  1200
DVFKWMPLRG LDPNVVTFCI LIGEYCKADK IEEALVFWEE LQILRVMPNI SNYNSVINAF  1260
CKKCRISVAS NLLKDALDKG LIPDVITYRA LIKAHSKAGS KQEASELLDN MIGCGIVPDD  1320
SLYNTVIGRL CNQWKFDTGM KLYNEIERKG MLPSISSYMS LIRVLLKIFR MEEFNEILNS  1380
TYVKELAFDV RTCNMLIDCL CMEDADFVMN LYDRMEVKGV APNASTYNAV IGGLCKVGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A3e-83193143910448pentatricopeptide repeat protein dPPR-U10
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0818922e-35EF081892.1 Picea sitchensis clone WS0296_I13 unknown mRNA.
GenBankEF0819182e-35EF081918.1 Picea sitchensis clone WS02710_O21 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.24e-58pentatricopeptide (PPR) repeat-containing protein