PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019391-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 262aa    MW: 29198.2 Da    PI: 8.7362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019391-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-112067148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W ++ d+ l + +  +G g+W++++++ g++R++k+c+ rw +yl
  PSME_00019391-RA 20 RGPWRQDKDLCLTQFIGAHGEGCWSSVPKKTGLKRCGKSCRFRWVNYL 67
                      89********************************************97 PP

2Myb_DNA-binding49.11.3e-1573116146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ +++E++l+++++k+lG++ W++I+  ++ gRt++++k++w++
  PSME_00019391-RA  73 RGNISPDEEDLIIRLHKLLGNR-WSLISGQIP-GRTDNEVKNYWNT 116
                       7899******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8721567IPR017930Myb domain
SuperFamilySSF466893.36E-2419114IPR009057Homeodomain-like
SMARTSM007172.1E-71969IPR001005SANT/Myb domain
PfamPF002498.0E-102067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-182174IPR009057Homeodomain-like
CDDcd001678.33E-62267No hitNo description
PROSITE profilePS5129423.25168122IPR017930Myb domain
SMARTSM007179.8E-1572120IPR001005SANT/Myb domain
PfamPF002495.3E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2375121IPR009057Homeodomain-like
CDDcd001678.40E-1177118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MELEPGKGPE TFQVAGGIDR GPWRQDKDLC LTQFIGAHGE GCWSSVPKKT GLKRCGKSCR  60
FRWVNYLRPS VKRGNISPDE EDLIIRLHKL LGNRWSLISG QIPGRTDNEV KNYWNTRLNK  120
KGHATGCIRL KSIKPRKPNI SEPAVSLLTP TSANQGGEKE KVICCPVIED LKNGPTSSNY  180
LMKQEASSSS DPKKLAAVSA EMDLWNSLQL NLYSIPSWTC SNFLHDDFKS DFFPEPFGYN  240
QENVHPGPLS AGEGEIVGRD RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23201217107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047392.15e-53PREDICTED: transcription factor WER
SwissprotQ9LTF78e-50MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A059CM761e-51A0A059CM76_EUCGR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-52myb domain protein 82