PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00019391-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29198.2 Da PI: 8.7362 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.9e-11 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W ++ d+ l + + +G g+W++++++ g++R++k+c+ rw +yl PSME_00019391-RA 20 RGPWRQDKDLCLTQFIGAHGEGCWSSVPKKTGLKRCGKSCRFRWVNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+++++k+lG++ W++I+ ++ gRt++++k++w++ PSME_00019391-RA 73 RGNISPDEEDLIIRLHKLLGNR-WSLISGQIP-GRTDNEVKNYWNT 116 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.872 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-24 | 19 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-7 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-10 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-18 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.33E-6 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 23.251 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-14 | 73 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.40E-11 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MELEPGKGPE TFQVAGGIDR GPWRQDKDLC LTQFIGAHGE GCWSSVPKKT GLKRCGKSCR 60 FRWVNYLRPS VKRGNISPDE EDLIIRLHKL LGNRWSLISG QIPGRTDNEV KNYWNTRLNK 120 KGHATGCIRL KSIKPRKPNI SEPAVSLLTP TSANQGGEKE KVICCPVIED LKNGPTSSNY 180 LMKQEASSSS DPKKLAAVSA EMDLWNSLQL NLYSIPSWTC SNFLHDDFKS DFFPEPFGYN 240 QENVHPGPLS AGEGEIVGRD RV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-23 | 20 | 121 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047392.1 | 5e-53 | PREDICTED: transcription factor WER | ||||
Swissprot | Q9LTF7 | 8e-50 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A059CM76 | 1e-51 | A0A059CM76_EUCGR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 3e-52 | myb domain protein 82 |