PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019344-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 327aa    MW: 36879.2 Da    PI: 6.8748
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019344-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.42.7e-55871911102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+haeenkrrtl+k+diaaa+trtdifd
  PSME_00019344-RA  87 QLHMFWAFQmqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWNHAEENKRRTLQKNDIAAAITRTDIFD 179
                       799***98866789******************************************************************************* PP

             NF-YC  91 flvdivprdelk 102
                       flvdivprdelk
  PSME_00019344-RA 180 FLVDIVPRDELK 191
                       *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-3569181IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.0E-38101173IPR009072Histone-fold
PfamPF008081.5E-21109172IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDHHNHHQHH PSSSGGAAPQ GMSQSYSGGA SPQGMSQSYP GGAAAPPPPV GMQGQQPPPQ  60
PGLHQSGGQQ AFHHHHMQQQ QQQQQQQLHM FWAFQMQEIE QVNDFKNHQL PLARIKKIMK  120
ADEDVRMISA EAPVLFAKAC EMFILELTLR SWNHAEENKR RTLQKNDIAA AITRTDIFDF  180
LVDIVPRDEL KEEGLGLGFA RGGMPPEGSF YYPSPSMPQL PHQQGMIGSP SVIMGRPAPI  240
QVDPSVMYMQ QQQTRPYVMP PHPHQPMWQH PHHPHPHQQQ QQQQMPDGQT YGHPHQQNQQ  300
HMPDDQSYGQ HQLTDEHSYG TPPRSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5795187395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1030480.0BT103048.1 Picea glauca clone GQ0205_L09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290279.15e-75nuclear transcription factor Y subunit C-1
SwissprotQ9FMV54e-71NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NKD31e-141A9NKD3_PICSI; Uncharacterized protein
STRINGCagra.0134s0008.1.p2e-75(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-67nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]