PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00019230-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 20209 Da PI: 5.8337 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.5 | 3.4e-31 | 6 | 93 | 15 | 101 |
DUF260 15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 dCv+apyf++++ +++fa vhk+FGasnv+kll +lp +r +a+ ++ yeA+ar++dPvyG+v +i++lqqq+++l+aela ++++l PSME_00019230-RA 6 DCVFAPYFCSDEgAAHFATVHKIFGASNVSKLLLHLPMPDRCEAVVTISYEAQARLQDPVYGCVTHIFALQQQVASLQAELAFMQAQL 93 7*********9989********************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.606 | 1 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-28 | 6 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDNILDCVFA PYFCSDEGAA HFATVHKIFG ASNVSKLLLH LPMPDRCEAV VTISYEAQAR 60 LQDPVYGCVT HIFALQQQVA SLQAELAFMQ AQLASRVSSG STSISANHPV ISSSSYSQHL 120 QFPAHLSLPC QPIPRPYNAL LSRVKEENSC GFATYMDCDF SMSPSDSSSP LMEVLQRCRS 180 LEEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 6 | 113 | 25 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 6 | 113 | 25 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026397266.1 | 2e-49 | LOB domain-containing protein 16-like | ||||
TrEMBL | D5A9D3 | 4e-91 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | GLYMA10G04050.2 | 3e-46 | (Glycine max) | ||||
STRING | XP_010262268.1 | 3e-46 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-46 | lateral organ boundaries-domain 29 |