PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018858-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 498aa    MW: 57003.8 Da    PI: 7.8891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018858-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.3e-15282327555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h  +ErrRR++iN++f  Lr+++P       +K +K ++Le+A+eY+k+Lq
  PSME_00018858-RA 282 HVLAERRRRNKINHKFKILRSIIPFV-----TKSDKESVLEEAIEYLKHLQ 327
                       8899*********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4219176IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.044277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17280344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16282343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-13282327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-13282330No hitNo description
SMARTSM003531.6E-15283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASNRSDLTT IHGCNISLQL QAIVRSTQWT YSIFWRFSPS KGLLVWRDGF YNSDVERSLQ  60
LRELFHSLKS EQEINQPSSN QCAALSPEDL TDTDWFYLVS MSFDFAPANC LPGRALANRC  120
PVWLCRANEV ESRVFSRALL AKTVVCIPLS DGVLELGVTK LVPEDPSLIE QVKGFFLYDA  180
QHVITSEIST DFSTVEDFKQ ATDSIETNMS EDIITTGWPR GQKRRNGGCY EHCKGGAFSK  240
CIEKGDIVMR KEPALTSSQS KLKNTFTEEK DDSELTDVNR YHVLAERRRR NKINHKFKIL  300
RSIIPFVTKS DKESVLEEAI EYLKHLQRRV LELKSHNKQT EVDHNDFQEQ NPISQAIIDK  360
QDEELSDEKH FNRVKKLRYA DDQIKSPWTA KRKVRVVKAS ATYPTKTSGA SIAEIEVSIN  420
DEKALLELKC CWKEGLLLQI MQTLNTLHLE TYDLQTSRVQ NNYFVATIKA TVIQQVGKTR  480
NGQRETIARV KEAIQRIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-171917912195Transcription factor MYC3
4rqw_B1e-171917912195Transcription factor MYC3
4rs9_A1e-171917912195Transcription factor MYC3
4yz6_A1e-171917912195Transcription factor MYC3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9751e-100A0A167V975_PICAB; Transcription factor bHLH-3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-49bHLH family protein