PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00018790-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 161aa MW: 18457.7 Da PI: 9.8353 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.3 | 4.6e-07 | 9 | 45 | 17 | 53 |
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++F+kn ps + L+k+l+L+ rqV +W +N R+ PSME_00018790-RA 9 QVFAKNELPSIPCKLVLSKQLDLPYRQVHMWLKNARY 45 58*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 7.23E-5 | 2 | 51 | No hit | No description |
SuperFamily | SSF46689 | 2.22E-7 | 8 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-4 | 9 | 45 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-6 | 10 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.778 | 11 | 50 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MPMQLMFCQV FAKNELPSIP CKLVLSKQLD LPYRQVHMWL KNARYMSLKK KNMNRLKESA 60 TPVISSNTRR LKVESSKSTP QIKEPDDVGN SYLTEMEKLG NIELKLESLR KILETVCPKE 120 GADFSNDKNP EGTSNLLSEK LLMYVPIMDL REKSLQVAPA R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-07 | pathogenesis related homeodomain protein A |