PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018760-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MIKC_MADS
Protein Properties Length: 155aa    MW: 17849.9 Da    PI: 9.9008
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018760-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-21945137
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevav 37
                      k+ien++nrqvtfskRrng+lKKA+ELSvLCd+e  +
  PSME_00018760-RA  9 KKIENSINRQVTFSKRRNGLLKKAFELSVLCDVELGL 45
                      78*******************************9765 PP
2K-box85.41.1e-2858140484
             K-box   4 ssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                        sg+s  ++++++++++qe a+++++i+ L+++ R+++Ge+Les+slkeL +Le+q+ek+l++iR++K+++l++qie l+ k 
  PSME_00018760-RA  58 ESGTSntAKQQDTQYMKQETANMEERIRILESSERNMMGEGLESCSLKELTKLESQVEKGLNHIRARKTKILMDQIELLKSKV 140
                       444444689999********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.259161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-25161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-22267IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-22323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-181045IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-223859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2265139IPR002487Transcription factor, K-box
PROSITE profilePS5129713.24970155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRGKIQLKK IENSINRQVT FSKRRNGLLK KAFELSVLCD VELGLMKMLE KYQKYSQESG  60
TSNTAKQQDT QYMKQETANM EERIRILESS ERNMMGEGLE SCSLKELTKL ESQVEKGLNH  120
IRARKTKILM DQIELLKSKV ICMAGPSFPC FFFAI
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829116.11e-44MADS-box protein SOC1 isoform X2
RefseqXP_025695999.18e-45MADS-box protein SOC1
RefseqXP_025696000.18e-45MADS-box protein SOC1
RefseqXP_025696001.18e-45MADS-box protein SOC1
SwissprotQ9FIS12e-40AGL42_ARATH; MADS-box protein AGL42
TrEMBLS5MJZ51e-63S5MJZ5_PICAB; DAL19 protein
STRINGERM965325e-44(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-39AGAMOUS-like 42