PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018495-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 333aa    MW: 37316.4 Da    PI: 4.8491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018495-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l++ v+++G ++W++ +r  g+ R++k+c++rw +yl
  PSME_00018495-RA 14 KGPWSQEEDRKLINHVQKHGVENWRALPRQAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding42.21.8e-1367112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + eE+e+++ ++   G++ W+tIa++++ gRt++++k+ w+++l
  PSME_00018495-RA  67 RGSLSSEEEEIIISLHGSIGNR-WSTIASYLP-GRTDNEIKNIWNTHL 112
                       67889*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.248965IPR017930Myb domain
SuperFamilySSF466891.14E-2910108IPR009057Homeodomain-like
SMARTSM007171.3E-141363IPR001005SANT/Myb domain
PfamPF002493.3E-151461IPR001005SANT/Myb domain
CDDcd001673.00E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.20966116IPR017930Myb domain
SMARTSM007173.4E-1166114IPR001005SANT/Myb domain
PfamPF002492.0E-1167112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRAPCCDKM GVKKGPWSQE EDRKLINHVQ KHGVENWRAL PRQAGLLRCG KSCRLRWTNY  60
LRPDLKRGSL SSEEEEIIIS LHGSIGNRWS TIASYLPGRT DNEIKNIWNT HLKKRLTETG  120
TASVNPVCTH SSSSCIVPTT PMAVNNCLSQ PLAMQNTNCY FPASPTSECS FSSSKDSATQ  180
FTADQTELQG AESDQHLFET CSVHRHETDE QRSAHDYINS LKIFLDIAEE SSSQEQYGSE  240
NYDITRLSDH ISEDYEVGTS DYISSSSIFS GKQLEHEMLE TSLADHSQEQ EDCSSSHGLH  300
VYGPVLLSPE CPLDFPDNPM DIAELLLPPL WMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QWR71e-66A0A0D6QWR7_ARACU; Uncharacterized protein
STRINGAquca_017_00716.11e-65(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-54myb domain protein 9